View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_12 (Length: 503)
Name: NF21662_low_12
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 160 - 480
Target Start/End: Complemental strand, 50234681 - 50234361
Alignment:
| Q |
160 |
gccgaagagaaagacaacataagtgccaagcacaaaacagaggtgtttctcaaacccattgttcttttttcttgctttctcttctttgatcagggacaat |
259 |
Q |
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| T |
50234681 |
gccgaagagaaagacaacataagtgccaagcacagaacagaggtgtttctcaaacccattgttcttttttcttgctttctcttctttgatcagggacaat |
50234582 |
T |
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| Q |
260 |
cagaaaccaagttggtggtatatgaaattgttgagtttgtaggttttgatgtgtgtaggtatatatatacgtttggtttataaatgtgtggtgtgtggga |
359 |
Q |
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| T |
50234581 |
ccgaaaccaagttggtggtatatgaaattgttgagtttgtaggttttgatgtgtgtaggtatatatatgcgtttggtttataaatgtgtggtgtgtggga |
50234482 |
T |
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| Q |
360 |
ttagtggtcaattttaattatagtaaagtcaaaattgtaacagaaattgtgatctggtggtttaaagagggaagcattttggatggttggccatgctttg |
459 |
Q |
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| T |
50234481 |
ttagtggtcaattttaattatagtaaagtcaaaattgtaacagaaattgtgatctggtggtttaaagagggaagcattttggatggttgggcatgctttg |
50234382 |
T |
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| Q |
460 |
tgactttatgtatattcttgg |
480 |
Q |
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| T |
50234381 |
tgactttatgtgtatttttgg |
50234361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 50234920 - 50234825
Alignment:
| Q |
18 |
tatcaaaaagttttttctcatcgtagaattcaggtataacatgggtcccaataacggctttaatggcgtcaattggtttaccagaaagagaagcaa |
113 |
Q |
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| T |
50234920 |
tatcaaaaagttttttctcatcgtagaattcaggtataacatgggtcccaataacggctttaatggcgtcaattggtttaccagaaagagaagcaa |
50234825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 50234740 - 50234794
Alignment:
| Q |
109 |
agcaaatacctaaccgaaaccaagttggctgaacaaataaacagtggtaaagccg |
163 |
Q |
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| T |
50234740 |
agcaaatacctaaccgaaaccaagttggctgaacaaataaacagtggtaaagccg |
50234794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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