View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21662_low_13 (Length: 481)
Name: NF21662_low_13
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 2 - 462
Target Start/End: Original strand, 12579776 - 12580238
Alignment:
| Q |
2 |
acacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggtg |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
12579776 |
acacttgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagggtctatgcggttgatcaatatgggtg |
12579875 |
T |
|
| Q |
102 |
tggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaacaaga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12579876 |
tggttgatagtttgtgaacctctcccgtatccaaacttaagccaagtaaaaaggtgatggaagagtaaattaaacaggatatatatcatcaccaacaaga |
12579975 |
T |
|
| Q |
202 |
tattttgacagannnnnnn--cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagatta |
299 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12579976 |
tattttgacagatttttttttcttaaataatgttaaatccttatttatgctagccaaaacaattgccaccaaagaaattggatttcttctagcaagatta |
12580075 |
T |
|
| Q |
300 |
acaacaacagaaaacaaacaacttgtcaccattttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaattccgtcata |
399 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
12580076 |
acaccaacagaaaacaaacaacttgtcaccattttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcctcatgttcaattccatcata |
12580175 |
T |
|
| Q |
400 |
ttttcttgtcaaagattgcagccttctaatgcttagtctcatacccataatgaatgaacaatc |
462 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12580176 |
ttttcttgtcaaagattatagtcttctaatgcttagtctcatacccataatgaatgaacaatc |
12580238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 12519480 - 12519949
Alignment:
| Q |
1 |
gacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgt---------ggttgatc |
91 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | || ||||| |
|
|
| T |
12519480 |
gacacttgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagagtctatatcattaccatgggtgatc |
12519579 |
T |
|
| Q |
92 |
aacatgggtgtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatc |
191 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
12519580 |
aacatgggtgtggttgatagtttgt-aacctctcccgtatccaaacttaacccaaataaaaaggtgatagaagagtaaattaaacagaatatatatcatt |
12519678 |
T |
|
| Q |
192 |
accaacaagatattttgacagannnnnnncttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctag |
291 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12519679 |
acctacaagatattttgacagatttttttcttaaataaagttaagtccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctag |
12519778 |
T |
|
| Q |
292 |
caagattaacaacaacagaaaacaaacaacttgtcaccattttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
12519779 |
caagattaacaccaacagaaaacaaacaatttgtcaccattttttatgaggaaaaacaaaaattgacaaccaagttaaaaggaaggcttcatgttcaatt |
12519878 |
T |
|
| Q |
392 |
ccgtcatattttcttgtcaaagattgcagccttctaatgcttagtctcatacccataatgaatgaacaatc |
462 |
Q |
| |
|
|| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12519879 |
ccatcatattttcttgtcaaagattatagtcttctaatgcttagtctcatacccataatgaaaaaacaatc |
12519949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 12495679 - 12495972
Alignment:
| Q |
1 |
gacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
12495679 |
gacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagggtctatgtggttgatgaacatgggt |
12495778 |
T |
|
| Q |
101 |
gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaacaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12495779 |
gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaataggatatatatcatcaccaacaag |
12495878 |
T |
|
| Q |
201 |
atattttgacagannnnnnncttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaa |
294 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12495879 |
atattttgacagatttttttattaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaa |
12495972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 12497639 - 12497172
Alignment:
| Q |
1 |
gacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggt |
100 |
Q |
| |
|
|||| ||||| |||||||| ||| ||||||| |||||| ||||||| ||||||||| | |||| | |||||| | ||||||||||||||||||||| || |
|
|
| T |
12497639 |
gacagttgagcctaatgcacacttaacattgccaattttcaaggccagaaccttatgccacctcaacaataaatgttctatgtggttgatcaacatgagt |
12497540 |
T |
|
| Q |
101 |
-gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaacaa |
199 |
Q |
| |
|
||||||| |||||| || |||||||| | |||||| | | |||| ||||||||||| | || |||||||| || || | |||||| |||||||| || |
|
|
| T |
12497539 |
tgtggttgcaagtttgcgagcctctccca-acccaaacatgaaccaagtaaaaaggtgagagaaaagtaaattcaacagaaaatatattatcaccaataa |
12497441 |
T |
|
| Q |
200 |
gatattttgacagannnnnnn-------cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagc |
292 |
Q |
| |
|
||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| | ||||| |||| ||||||||||||| |
|
|
| T |
12497440 |
gatgttttgacagatcaataattgttttcttaaataaagttaaatcgttatttatgctagccaaaacagctggcggcaaagtaatttgatttcttctagc |
12497341 |
T |
|
| Q |
293 |
aagattaacaacaacagaaaacaaacaacttgtcaccattttt-tatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
|||||||| | ||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
12497340 |
aagattaatagcaatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaatt |
12497241 |
T |
|
| Q |
392 |
ccgtcatattttcttgtcaaagattgcagccttctaatgcttagtctcatacccataatgaatgaacaa |
460 |
Q |
| |
|
|| |||| ||||| |||||||||| |||||| | |||| || |||||||||||| |||||| ||||| |
|
|
| T |
12497240 |
ccatcatggtttctcgtcaaagattatagccttttcatgcataatctcatacccatgatgaataaacaa |
12497172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 12521504 - 12521037
Alignment:
| Q |
1 |
gacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggt |
100 |
Q |
| |
|
|||| ||||| |||||||| ||| ||||||| |||||| ||||||| ||||||||| | |||| | |||||| | ||||||||||||||||||||| || |
|
|
| T |
12521504 |
gacagttgagcctaatgcacacttaacattgccaattttcaaggccagaaccttatgccacctcaacaataaatgttctatgtggttgatcaacatgagt |
12521405 |
T |
|
| Q |
101 |
-gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaacaa |
199 |
Q |
| |
|
||||||| |||||| || |||||||| | |||||| | | |||| ||||||||||| | || |||||||| || || | |||||| |||||||| || |
|
|
| T |
12521404 |
tgtggttgcaagtttgcgagcctctccca-acccaaacatgaaccaagtaaaaaggtgagagaaaagtaaattcaacagaaaatatattatcaccaataa |
12521306 |
T |
|
| Q |
200 |
gatattttgacagannnnnnn-------cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagc |
292 |
Q |
| |
|
||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| | ||||| |||| ||||||||||||| |
|
|
| T |
12521305 |
gatgttttgacagatcaataattgttttcttaaataaagttaaatcgttatttatgctagccaaaacagctggcggcaaagtaatttgatttcttctagc |
12521206 |
T |
|
| Q |
293 |
aagattaacaacaacagaaaacaaacaacttgtcaccattttt-tatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
|||||||| | ||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
12521205 |
aagattaatagcaatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaatt |
12521106 |
T |
|
| Q |
392 |
ccgtcatattttcttgtcaaagattgcagccttctaatgcttagtctcatacccataatgaatgaacaa |
460 |
Q |
| |
|
|| |||| ||||| |||||||||| |||||| | |||| || |||||||||||| |||||| ||||| |
|
|
| T |
12521105 |
ccatcatggtttctcgtcaaagattatagccttttcatgcataatctcatacccatgatgaataaacaa |
12521037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 221 - 460
Target Start/End: Complemental strand, 12581595 - 12581355
Alignment:
| Q |
221 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | | ||||| |||| ||||||||||||||||||||| | ||| |||||||||| || |
|
|
| T |
12581595 |
cttaaataaagttaaatccttatttatgctagccaaaacagtttgcggcaaagtaattcgatttcttctagcaagattaatagcaatagaaaacaaataa |
12581496 |
T |
|
| Q |
321 |
cttgtcaccattttt-tatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaattccgtcatattttcttgtcaaagattgca |
419 |
Q |
| |
|
||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||| ||||| ||||||||| | |
|
|
| T |
12581495 |
cttttcaccatttttctacgaggaaaaacaaaaattgacaaccaagtagcaaggaaggcttcatgttcaattccatcatggtttctcatcaaagattata |
12581396 |
T |
|
| Q |
420 |
gccttctaatgcttagtctcatacccataatgaatgaacaa |
460 |
Q |
| |
|
||||| | |||| ||||||||||||||| |||||| ||||| |
|
|
| T |
12581395 |
gccttttcatgcatagtctcatacccatgatgaataaacaa |
12581355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 348 - 462
Target Start/End: Original strand, 12495970 - 12496084
Alignment:
| Q |
348 |
caaaaattgacaaccaagtaaaaaggaaggcttcatcttcaattccgtcatattttcttgtcaaagattgcagccttctaatgcttagtctcatacccat |
447 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12495970 |
caaagattgacaaccaagtaaaaaggaaggcttcatcttcaattccgtcatattttcttgtcaaagattgcagccttctaatgcttagtctcatacccat |
12496069 |
T |
|
| Q |
448 |
aatgaatgaacaatc |
462 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12496070 |
aatgaatgaacaatc |
12496084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 12581749 - 12581655
Alignment:
| Q |
6 |
ttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggt |
100 |
Q |
| |
|
||||| |||||||| ||| ||||||| ||||| ||||||| ||||||||| | |||| | |||| | | | |||||||||||||||||||||| |
|
|
| T |
12581749 |
ttgagcctaatgcacacttaacattgctaattttcaaggccagaaccttatgccacctcaacaatatatgttatatgtggttgatcaacatgggt |
12581655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 20046554 - 20046155
Alignment:
| Q |
1 |
gacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggt |
100 |
Q |
| |
|
|||| ||||||||||||| |||| |||||| ||||||| ||| || |||||||||| | |||||| ||||||||||| || | ||||||||||||||| |
|
|
| T |
20046554 |
gacagttgagtctaatgccaacttaacattatcaattttcaatgcgtgaaccttatgccacctaaacaataaagggtcgctgggattgatcaacatgggt |
20046455 |
T |
|
| Q |
101 |
-gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaacaa |
199 |
Q |
| |
|
||||| | | |||| ||||||||||| | |||||||| | |||||||||| ||||||| || |||||||| || |||| || ||||| ||||||| |
|
|
| T |
20046454 |
tgtggtggtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggtgatagaatagtaaattcaacaggaaatctatcaccaccaaccg |
20046355 |
T |
|
| Q |
200 |
gatattttgacagannnnnnn-------cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagc |
292 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||||||| ||||||| |||||||| | | |||||||||||||||||| |||||| |
|
|
| T |
20046354 |
gatattttaacagatcaataattgtgttcttaaataaacttaaatccttatatatgctacccaaaacagcaggtgccaaagcaattggatttcctctagc |
20046255 |
T |
|
| Q |
293 |
aagattaacaacaacagaaaacaaacaacttgtcaccat-tttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
|||||||| | ||| ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
20046254 |
aagattaatagcaatagaaaacaaacaatttttcaccatatttttatgaggaaaaacaaaaattgacaaccaagtagtaaggaaggcttcgtgttcaatt |
20046155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 221 - 391
Target Start/End: Complemental strand, 26647207 - 26647036
Alignment:
| Q |
221 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
320 |
Q |
| |
|
|||||| ||| |||||||||||| || |||||| |||||| | | |||||||||||||||| | ||||||||||| |||| ||| || |||||||||| |
|
|
| T |
26647207 |
cttaaacaaacttaaatccttatataagctagctaaaacagccggtgccaaagcaattggattccctctagcaagatgaacagcaataggaaacaaacaa |
26647108 |
T |
|
| Q |
321 |
cttgtcaccatttttt-atgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
||| |||||| ||| ||||||||||||| ||| ||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
26647107 |
cttttcaccaaatttagatgaggaaaaacataaactgacaaccaagtagaaaggaatgcttcatgttcaatt |
26647036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 391
Target Start/End: Complemental strand, 19951326 - 19951156
Alignment:
| Q |
222 |
ttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaac |
321 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| |||||| ||| |||||||||| ||||||| ||||||||||| || | ||| || | | || ||| |
|
|
| T |
19951326 |
ttaaacaaagttaaatccttatatatgctagctaaaacagctggagccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataac |
19951227 |
T |
|
| Q |
322 |
ttgtcaccatttt-ttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
| |||||| ||| |||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
19951226 |
tcctcaccaatttattattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttcatgttcaatt |
19951156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 391
Target Start/End: Complemental strand, 19956283 - 19956116
Alignment:
| Q |
228 |
aaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaacttgtca |
327 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| ||| |||||||||| ||||||| ||||||||||| |||||||| || ||||||| ||||| ||| |
|
|
| T |
19956283 |
aaagttaaatccttatatatgctagctaaaacagctggtgccaaagcaataggatttcctctagcaagatgaacaacaataggaaacaaataacttttca |
19956184 |
T |
|
| Q |
328 |
c----cattttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
| | | ||||||||| |||||||||||||||||||||||| ||| || ||||||| ||||||| |
|
|
| T |
19956183 |
cggaagaatatttatgagggaaaacaaaaattgacaaccaagtagcaagaaaagcttcatgttcaatt |
19956116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 365
Target Start/End: Complemental strand, 26653355 - 26653210
Alignment:
| Q |
221 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
320 |
Q |
| |
|
|||||| ||||| || ||||||| ||| ||||| |||||| ||| |||||||||| ||||||| ||||||||||| |||| ||| |||||||||| || |
|
|
| T |
26653355 |
cttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaagcaataggatttcctctagcaagatgaacagcaatagaaaacaaagaa |
26653256 |
T |
|
| Q |
321 |
cttgtcac-cattttttatgaggaaaaacaaaaattgacaaccaag |
365 |
Q |
| |
|
||| |||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
26653255 |
cttttcactaattctatatgaggaaaaacaaaaattgacaaccaag |
26653210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 391
Target Start/End: Original strand, 20015891 - 20016287
Alignment:
| Q |
7 |
tgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatggg-tgtggt |
105 |
Q |
| |
|
|||||||||||| | | |||||||||||||| ||| ||||||||||||| | |||||| |||||||||||| || |||||||||||||| |||||| |
|
|
| T |
20015891 |
tgagtctaatgccaccataacattgtcaattttcaaagcctgaaccttatgccacctaaacaataaagggtcttcatgattgatcaacatgggttgtggt |
20015990 |
T |
|
| Q |
106 |
tgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaacaagatatt |
205 |
Q |
| |
|
|| | || |||||||||||| | ||||| || | ||||||||| |||||| ||| |||| || |||||||| ||||| |||| ||| |||||| |
|
|
| T |
20015991 |
tgtaaaattttgaacctctcccacacccaaatttgaaccaaataaatgggtgattgaagtgtaacttctaaaggatacctatcaccacccacatgatatt |
20016090 |
T |
|
| Q |
206 |
ttgaca-------gannnnnnncttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagatt |
298 |
Q |
| |
|
|||||| | |||||| ||| ||||||| |||| |||||||||||| ||| ||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
20016091 |
ttgacaaatcaacaattgttttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaataggatttcgtctagcaagatg |
20016190 |
T |
|
| Q |
299 |
aacaacaacagaaaacaaacaacttgtcac----cattttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
|| | ||| | ||||||||||||| |||| | | ||||||||| |||||||||||||||| ||||||| ||| || ||||||| ||||||| |
|
|
| T |
20016191 |
aatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatt |
20016287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 391
Target Start/End: Complemental strand, 19818760 - 19818589
Alignment:
| Q |
221 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
320 |
Q |
| |
|
|||||| ||| ||||||| |||| ||| ||||||||||| | | |||||||||| ||||| | |||||||||||||||| |||||| ||||| | || |
|
|
| T |
19818760 |
cttaaacaaacttaaatctttataaatgttagccaaaacagccggtgccaaagcaataggattccctctagcaagattaacagcaacaggaaacagataa |
19818661 |
T |
|
| Q |
321 |
cttgtcaccatttt-ttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
|| |||||| || ||||||||||||||||||||||| ||||||||| ||| || ||||||| ||||||| |
|
|
| T |
19818660 |
tttttcaccaaattcttatgaggaaaaacaaaaattgataaccaagtagcaagaaaagcttcatgttcaatt |
19818589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 391
Target Start/End: Complemental strand, 19849423 - 19849022
Alignment:
| Q |
8 |
gagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggt------- |
100 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||||||||||||||| | | |||| |||||||| || |||||| ||||||||| | |
|
|
| T |
19849423 |
gagtctaatgccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggatccccatggttggtcaacatggtttgtggct |
19849324 |
T |
|
| Q |
101 |
gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaacaag |
200 |
Q |
| |
|
||||||| | ||| |||||||||||| | ||||| || | |||||||||| |||||| ||||||||| | || ||| || ||||| |||||||| | |
|
|
| T |
19849323 |
gtggttgcaaatttttgaacctctcccacacccaaatttgaaccaaataaaagggtgatttaagagtaatctccaagggaaatctatcaccaccaacatg |
19849224 |
T |
|
| Q |
201 |
atattttgaca-------gannnnnnncttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagca |
293 |
Q |
| |
|
| ||||||||| || |||||| |||||||||||||||| || ||||| |||||| | | | |||||||| |||||| ||||||| |
|
|
| T |
19849223 |
acattttgacaaatcagtgattgttttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaatacgatttcctctagca |
19849124 |
T |
|
| Q |
294 |
agattaacaacaacagaaaacaaacaacttgtcaccat----tttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaa |
389 |
Q |
| |
|
|||| ||| ||| || ||||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||| ||| || ||||||| ||||| |
|
|
| T |
19849123 |
agatatacagcaataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaa |
19849024 |
T |
|
| Q |
390 |
tt |
391 |
Q |
| |
|
|| |
|
|
| T |
19849023 |
tt |
19849022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 391
Target Start/End: Original strand, 20036515 - 20036689
Alignment:
| Q |
221 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
320 |
Q |
| |
|
|||||| |||||||||||||||| || ||||| |||||| | | | |||||||| |||||| ||||||||||| ||| ||| || ||||||| || |
|
|
| T |
20036515 |
cttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaatacgatttcctctagcaagatatacagcaataggaaacaaagaa |
20036614 |
T |
|
| Q |
321 |
cttgtcaccat----tttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| ||||||||||||| ||| || ||||||| ||||||| |
|
|
| T |
20036615 |
cttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatt |
20036689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 17115139 - 17115011
Alignment:
| Q |
9 |
agtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgg-gtgtggttg |
107 |
Q |
| |
|
|||||||||| | || |||||||||||||| || |||||||||| ||| | |||||| |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
17115139 |
agtctaatgctagcttaacattgtcaattttcacggcctgaaccctatgccacctaaacaataaagggtctccatggttgatcaacatggattgtggttg |
17115040 |
T |
|
| Q |
108 |
atagtttgtgaacctctcccgtatccaaa |
136 |
Q |
| |
|
| ||| |||||||||||| ||||||| |
|
|
| T |
17115039 |
taaatttttgaacctctcccacatccaaa |
17115011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 228 - 367
Target Start/End: Complemental strand, 19838592 - 19838449
Alignment:
| Q |
228 |
aaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaacttgtca |
327 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||| ||| |||||||||| | ||||| ||||||||||| |||||||| | ||||||| | ||| ||| |
|
|
| T |
19838592 |
aaagttaaatcattatatatgctagctaaaacagctggtgccaaagcaatagaatttcctctagcaagatgaacaacaattggaaacaaaaagcttttca |
19838493 |
T |
|
| Q |
328 |
c----cattttttatgaggaaaaacaaaaattgacaaccaagta |
367 |
Q |
| |
|
| | | || || |||||||||||||||||||||||||||| |
|
|
| T |
19838492 |
cgcaagagtgttgattaggaaaaacaaaaattgacaaccaagta |
19838449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 19812369 - 19812312
Alignment:
| Q |
334 |
tttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||| |
|
|
| T |
19812369 |
tttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaatt |
19812312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 19858496 - 19858404
Alignment:
| Q |
8 |
gagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggt |
100 |
Q |
| |
|
||||||||||| |||| ||||||||||| || |||||||| |||||||| | |||||| |||||||| ||| || ||||||||||||||| |
|
|
| T |
19858496 |
gagtctaatgccaacttaacattgtcaactttcaaggccttaaccttatgccacctaaacaataaaggttctccatgcttgatcaacatgggt |
19858404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 30914728 - 30914675
Alignment:
| Q |
338 |
tgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
30914728 |
tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatt |
30914675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 19853599 - 19853544
Alignment:
| Q |
336 |
tatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| || ||||||| ||||||| |
|
|
| T |
19853599 |
tatgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatt |
19853544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 367
Target Start/End: Original strand, 24839897 - 24840036
Alignment:
| Q |
232 |
ttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaacttgtcaccat |
331 |
Q |
| |
|
||||||| |||| || ||||||||||||| | | |||||| ||| ||||| | |||||| |||| |||| |||||| ||||||| ||| | |||| | |
|
|
| T |
24839897 |
ttaaatcgttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagctagatgaacagcaacaggaaacaaagaacatttcactag |
24839996 |
T |
|
| Q |
332 |
----tttttatgaggaaaaacaaaaattgacaaccaagta |
367 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
24839997 |
agagtatttatgagggaaaacaaaaattgacaaccaagta |
24840036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 19951437 - 19951344
Alignment:
| Q |
118 |
aacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaacaagatattttgaca |
211 |
Q |
| |
|
|||||||||| ||||||| || | |||| ||||| |||||| |||||||| || ||||||||| ||||| |||| ||| |||||||||||| |
|
|
| T |
19951437 |
aacctctcccaaatccaaatttgaaccaagtaaaagggtgattgaagagtaagttctaaaggatatctatcaccacccacatgatattttgaca |
19951344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 6397423 - 6397824
Alignment:
| Q |
1 |
gacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggt |
100 |
Q |
| |
|
|||| |||||||| |||| |||| || ||||||||||| |||||||||||||||| | |||||| |||||||||||||||||| | |||||||| ||| |
|
|
| T |
6397423 |
gacagttgagtctcatgccaacttaatattgtcaattttaaaggcctgaaccttataccacctaaaaaataaagggtctatgtgggtaatcaacataggt |
6397522 |
T |
|
| Q |
101 |
-gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaacaa |
199 |
Q |
| |
|
||| | | | ||||||||||| || |||||||| | |||| ||||||||||||| ||||||||||| || | || || ||||||||||||||| |
|
|
| T |
6397523 |
tgtgaacgcaaatgtgtgaacctcttccacgcccaaacttgaaccaagtaaaaaggtgatagaagagtaaattcaacatgaaatttatcatcaccaacaa |
6397622 |
T |
|
| Q |
200 |
gatattttgacagannnnnnn-------cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagc |
292 |
Q |
| |
|
||||||| |||| | ||||||||||| ||||||||||| |||| ||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
6397623 |
gatatttcgacaaatcaataattgttttcttaaataaagataaatccttatatatgatagccaaaacagatggtgccaaagcaattggattttctctagc |
6397722 |
T |
|
| Q |
293 |
aagattaacaacaacagaaaacaaacaa--cttgtcaccatttttt-atgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaa |
389 |
Q |
| |
|
|||||||||| || ||||| ||||||| ||| |||||||||||| | |||||||| || ||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
6397723 |
aagattaacattaatagaaagcaaacaaaacttttcaccatttttttaggaggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaa |
6397822 |
T |
|
| Q |
390 |
tt |
391 |
Q |
| |
|
|| |
|
|
| T |
6397823 |
tt |
6397824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 68 - 391
Target Start/End: Complemental strand, 6398628 - 6398293
Alignment:
| Q |
68 |
aataaagggtctatgtggttgatcaacatgggt-gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagag |
166 |
Q |
| |
|
||||||| || | ||| ||||||||||||| || ||||||| |||||||||||||||||| | | |||||| | ||| ||||||||||| | |||| |
|
|
| T |
6398628 |
aataaagagtgtctgttgttgatcaacatgagttgtggttgcaagtttgtgaacctctcccacacctaaacttgaaccacgtaaaaaggtgacaacagag |
6398529 |
T |
|
| Q |
167 |
taaattaaaaaggatatatatcatcaccaacaagatattttgacagannnnnnn--------cttaaataaagttaaatccttatttat--gctagccaa |
256 |
Q |
| |
|
|||||| || |||| || |||||||| ||||| |||||||||||| | ||||||||||||||||||||||| ||| |||||| || |
|
|
| T |
6398528 |
taaattcaacaggaaatctatcatcatcaacatgatattttgacatatcaataattttttttcttaaataaagttaaatccttatatatatgctagctaa |
6398429 |
T |
|
| Q |
257 |
aacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaacttgtcaccatt-ttttatgaggaaaaacaaaaatt |
355 |
Q |
| |
|
|||| ||| ||||| | |||||||||| |||||| ||||||||| ||| |||||||||||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
6398428 |
aacagctggtgccaaaccgattggatttcctctagcgagattaacagcaatagaaaacaaacaacttttcaccattgttttactaggaaaaacaaaaatt |
6398329 |
T |
|
| Q |
356 |
gacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||| |
|
|
| T |
6398328 |
aacaaccaattagcaaggaaggcttcatgttcaatt |
6398293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 328
Target Start/End: Original strand, 22651805 - 22651912
Alignment:
| Q |
221 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
320 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| ||| | |||||||| ||||||| ||||||||||| |||| ||| || |||||||||| |
|
|
| T |
22651805 |
cttaaacaaagttaaatccttatacatgctagccaaaacagctggtgcaaaagcaataggatttcctctagcaagatgaacagcaataggaaacaaacaa |
22651904 |
T |
|
| Q |
321 |
cttgtcac |
328 |
Q |
| |
|
||| |||| |
|
|
| T |
22651905 |
cttttcac |
22651912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 389
Target Start/End: Original strand, 22689567 - 22689739
Alignment:
| Q |
221 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
320 |
Q |
| |
|
|||||| ||| | |||||||||| |||||||||||||||| | | |||||||||| | ||| | |||||| |||| || | || || ||||||| || |
|
|
| T |
22689567 |
cttaaacaaactcaaatccttatatatgctagccaaaacagcaggtgccaaagcaatagtattgcctctagccagatgaatagaaatagtaaacaaagaa |
22689666 |
T |
|
| Q |
321 |
cttgtcacc---at-tttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaa |
389 |
Q |
| |
|
||| | ||| || |||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||| |
|
|
| T |
22689667 |
cttttgaccgacatatttttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaa |
22689739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 22652119 - 22652174
Alignment:
| Q |
336 |
tatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
22652119 |
tatgagcaaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatt |
22652174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 22685708 - 22685740
Alignment:
| Q |
333 |
ttttatgaggaaaaacaaaaattgacaaccaag |
365 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
22685708 |
ttttatgaggaaaaacaaaaagtgacaaccaag |
22685740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 9815461 - 9815270
Alignment:
| Q |
8 |
gagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatggg-tgtggtt |
106 |
Q |
| |
|
||||||||||| | || |||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||| |||||||||||||| | ||| | |
|
|
| T |
9815461 |
gagtctaatgccagcttaacattgtcaattttcaaggcctgaaccttatgtcacctaaacaataaagggtctccgtgattgatcaacatgggttctggct |
9815362 |
T |
|
| Q |
107 |
gatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaaca |
198 |
Q |
| |
|
| | ||| ||||||||||| | ||||| || | |||| ||||| |||||| |||||||| || ||||||||| ||||| |||||||| |
|
|
| T |
9815361 |
gtaaattttggaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggatatctatcaccaccaaca |
9815270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 26354635 - 26354809
Alignment:
| Q |
25 |
aacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggt-gtggttgatagtttgtgaacctc |
123 |
Q |
| |
|
|||||||||||||| |||||| || ||| ||| | | |||| |||||||||||| ||||||||||||||||| | ||||| | ||| |||||||| |
|
|
| T |
26354635 |
aacattgtcaattttcaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaattttttgaacctc |
26354734 |
T |
|
| Q |
124 |
tcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaaca |
198 |
Q |
| |
|
|||| | ||||| || | |||| ||||| |||||| |||||||| || ||||||||| ||||| |||||||| |
|
|
| T |
26354735 |
tcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccaccaaca |
26354809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 363
Target Start/End: Complemental strand, 9815240 - 9815097
Alignment:
| Q |
221 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
320 |
Q |
| |
|
|||||| ||| ||||||| |||| || ||||| |||||| ||| |||||||||| | ||||| ||||||||||| || | ||| |||||||||| || |
|
|
| T |
9815240 |
cttaaacaaacttaaatcgttataaatactagctaaaacagctggtgccaaagcaatagaatttcctctagcaagatgaatagcaatagaaaacaaagaa |
9815141 |
T |
|
| Q |
321 |
cttgtcaccattt-tttatgaggaaaaacaaaaattgacaacca |
363 |
Q |
| |
|
||| |||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
9815140 |
cttttcaccaaagatttatgagttaaaacaaagattgacaacca |
9815097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 26354850 - 26354948
Alignment:
| Q |
232 |
ttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaacttgtcacca |
330 |
Q |
| |
|
|||||||||||| ||||||||| |||||| | | |||||||||| | ||||| ||||||||||| || | ||| || ||||||| ||||| |||||| |
|
|
| T |
26354850 |
ttaaatccttatatatgctagctaaaacagccggtgccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcacca |
26354948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 391
Target Start/End: Complemental strand, 1717417 - 1717246
Alignment:
| Q |
221 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
320 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| |||||| | | |||||||||| ||||||| ||||||||||| |||| ||| || ||||||| | |
|
|
| T |
1717417 |
cttaaacaaagttaaatccttatatatgctagctaaaacagccggtgccaaagcaataggatttcctctagcaagatgaacagcaataggaaacaaagat |
1717318 |
T |
|
| Q |
321 |
cttgtcacc-attttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
391 |
Q |
| |
|
|| ||||| | |||||||||||||||| ||| |||||||||||| ||| || ||||||| ||||||| |
|
|
| T |
1717317 |
tttttcaccaaagctttatgaggaaaaacataaaccgacaaccaagtagcaagaaatgcttcatgttcaatt |
1717246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University