View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_14 (Length: 432)
Name: NF21662_low_14
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 29395554 - 29395152
Alignment:
| Q |
18 |
tgtttagcaaaggataaacgaccaagattcattcctaaaatacccctagggtcagtagattctgtagcacagcccaagattaaaggaggggtagaaacgg |
117 |
Q |
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| T |
29395554 |
tgtttagcaaaggataaacgaccaagattcattcctaaaatacccctagggtcagtggattctgtagcacagcccaagattaaaggaggggtagaaacgg |
29395455 |
T |
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| Q |
118 |
aacgtgagaatgtgaatttttctcggacgagattaccctcagcataagtgccgtctgcgtaaaaataggaatagtggcagagacggttttggtcacaaga |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29395454 |
aacgtgagaatgtgaatttttctctgacgagattaccctcagcataagtgccgtctgcgtaaaaataggaatagtggcagagacggttttggtcacaaga |
29395355 |
T |
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| Q |
218 |
agttgggagggtaaaatcgggaattcgtggtttacagagagggtgagtacaagggaggatagagaaagttgaagagagagaaggatcaaaggatgctgtt |
317 |
Q |
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| T |
29395354 |
agttgggagggtaaaatcgggaattcgtggtttacagagagggtgagtacaagggaggatagagaaagttgaagagagagaaggatcaaaggatgctgtt |
29395255 |
T |
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| Q |
318 |
ggaggttgttttttgtgacactgaatccatgaaagttggctaccggtgtccaacaccattggttgagtttgaggtggtgttccaatggggaggttaatga |
417 |
Q |
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| T |
29395254 |
ggaggttgttttttgtgacactgaatccatgaaagttggctaccagtgtccaacaccattggttgagtttgaggtggtgttccaatggggaggttaatga |
29395155 |
T |
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| Q |
418 |
tga |
420 |
Q |
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| T |
29395154 |
tga |
29395152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 33250497 - 33250421
Alignment:
| Q |
330 |
ttgtgacactgaatccatgaaagttggctaccggtgtccaacaccattggttgagtttgaggtggtgttccaatggg |
406 |
Q |
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| T |
33250497 |
ttgtgacattgaatccatgaaagttggcttcctgtgtctaaaaccatttgttgaagctgtggtggtgtgccaatggg |
33250421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 33264589 - 33264513
Alignment:
| Q |
330 |
ttgtgacactgaatccatgaaagttggctaccggtgtccaacaccattggttgagtttgaggtggtgttccaatggg |
406 |
Q |
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| T |
33264589 |
ttgtcacagtgaatccatgaaacttggcttcctgtatccaaaaccatttgttgaagctgtggtggtgttccaatggg |
33264513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 50236994 - 50236917
Alignment:
| Q |
330 |
ttgtgacactgaatccatgaaagttggctaccggtgtccaaca-ccattggttgagtttgaggtggtgttccaatggg |
406 |
Q |
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|||||||||||||||||||||| |||||| || || ||||| | ||||| ||||| ||| |||||||| |||||||| |
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| T |
50236994 |
ttgtgacactgaatccatgaaatttggcttcctgtatccaatacccatttgttgaagttgtggtggtgtgccaatggg |
50236917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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