View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_15 (Length: 432)
Name: NF21662_low_15
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 6966918 - 6967310
Alignment:
| Q |
19 |
gaatgaaaagggtgcaaatgacaaagtcatttcctctttggcatatattttgtgttattgtggatagaattttgatgacaataaacaatgtaatagctct |
118 |
Q |
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| T |
6966918 |
gaatgaaaagggtgcaaatgacaaagtcatttcctctttggcatatattttgtgttattgtgaatagaattttgatgacaataaacaatgtaatagctct |
6967017 |
T |
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| Q |
119 |
tcaccaaaaatacaatataataacttatctttcaatgcaagaggtttgataaagaaaacactccaatacaagtatgtagctcgttagtccacgatgtgtc |
218 |
Q |
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| T |
6967018 |
tcaccaaaaatacaatataataacttatctttcaatgcaagaggtttgataaagaaaacactccaatacaagtatgtagctcattagtctacgatgtgtc |
6967117 |
T |
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| Q |
219 |
aacacagtgatacgagtttgaatttgtaactttaaagtacgaagtttaaatcctacgtggaatctttgtaaaatgatcatttaacaaataatttcccttg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967118 |
aacacagtgatacgagtttgaatttgtaactttaaagtacgaagtttaaattctacgtggaatctttgtaaaatgatcatttaacaaataatttcccttg |
6967217 |
T |
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| Q |
319 |
ccccaattcaggnnnnnnnngtcccccaccactagtaacacnnnnnnntcattataacatcaatcaagtgctataattaaataatacttgcagg |
412 |
Q |
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| T |
6967218 |
ccccaatttaggaaaaaaaagtcccccactactagtaacac-aaaaaatcattataacatcaatcaagtgctataattaaataatacttgcagg |
6967310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 25525287 - 25525203
Alignment:
| Q |
19 |
gaatgaaaagggtgcaaatgacaaagtcatttcctctttggcatatatt--ttgtgttattgtggatagaattttgatgacaata |
101 |
Q |
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||||||||||| |||| |||||||| |||| ||||||||||||||| || |||| ||||| |||||||||||||||||||| |
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| T |
25525287 |
gaatgaaaaggatgcacatgacaaaaccattatttctttggcatatattcattatgttcttgtgaatagaattttgatgacaata |
25525203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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