View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_17 (Length: 335)
Name: NF21662_low_17
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 43633718 - 43633402
Alignment:
| Q |
1 |
tgatactcaaacttctaattactagaccggaaaggaagcactctgttgattcttcatcatctgacagacaatgaatcaaaagatggtttttaaaatggac |
100 |
Q |
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| T |
43633718 |
tgatactcaaacttctaattactagaccggaaaggaagcactctgttgattcttcatcatctgacagacaatgaatcaaaagatggtttttaaaatggac |
43633619 |
T |
|
| Q |
101 |
tctaagcacaaggattcaagtgattataattagtatataaataaatagatacaaaccaaaatttatgccagtattcccaatatgtggatttgtcatgagc |
200 |
Q |
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| T |
43633618 |
tctaagcacaaggatttaagtgattataattagtatataaataaatagatacaaaccaaaatttatgccagtattcccaatatgtggatttgtcatgagc |
43633519 |
T |
|
| Q |
201 |
acaaactggccagcataactaggatcagttaatatttcttgatacctgaggaatacatgcataacaaataaaacacccactcaattagattgaaatcaag |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43633518 |
acaaactggccagcataactaggatcagttaaaatttcttgatacctgaggaatacatgcataacaaataaaacacccactcaattagattgaaatcaag |
43633419 |
T |
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| Q |
301 |
ccatcaaacaacaagag |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
43633418 |
ccatcaaacaacaagag |
43633402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 42961934 - 42961675
Alignment:
| Q |
1 |
tgatactcaaacttctaattactagaccggaaaggaagcactctgttgattcttcatcatctgacagacaatgaatcaaaagatggtttttaaaatggac |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||||| |||||||| || ||||||||||||||| || |||| | |||||||||||| || | |
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| T |
42961934 |
tgatactcaaacttctaattactagaccagaaagaaagcactgcgttgattcctcgtcatctgacagacaacaaaacaaagg-tggtttttaaaacggcc |
42961836 |
T |
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| Q |
101 |
tctaagcacaaggattcaagtgattataattagtatataaataaatagatacaaaccaaaatttatgccagtattcccaatatgtggatttgtcatgagc |
200 |
Q |
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|| || |||||||||||| |||| |||| | ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42961835 |
tcgaaacacaaggattcaggtgag---aatt-gaatataaata----gataccaaccaaaatttatgccagtattcccaatatgcggatttgtcatgaga |
42961744 |
T |
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| Q |
201 |
acaaactggccagcataactaggatcagttaatatttcttgatacctgaggaatacatgcataacaaat |
269 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||| |
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| T |
42961743 |
acaaactgtccagcataactaggatcagttaaaatttcttgatacctgaggaacacagacataacaaat |
42961675 |
T |
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