View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21662_low_2 (Length: 715)

Name: NF21662_low_2
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21662_low_2
NF21662_low_2
[»] chr5 (8 HSPs)
chr5 (48-711)||(1501349-1502012)
chr5 (592-711)||(25955940-25956059)
chr5 (593-711)||(38280253-38280371)
chr5 (592-711)||(42250116-42250235)
chr5 (591-711)||(7886354-7886474)
chr5 (147-207)||(1506686-1506746)
chr5 (592-710)||(38951381-38951499)
chr5 (5-34)||(1502236-1502265)
[»] chr7 (11 HSPs)
chr7 (592-711)||(496683-496802)
chr7 (591-711)||(11765706-11765826)
chr7 (590-711)||(7527244-7527365)
chr7 (591-711)||(2286457-2286577)
chr7 (592-711)||(25185913-25186032)
chr7 (592-711)||(48057679-48057798)
chr7 (592-711)||(42535194-42535313)
chr7 (599-711)||(23844642-23844754)
chr7 (591-710)||(31427241-31427362)
chr7 (592-711)||(40855131-40855251)
chr7 (591-647)||(4649481-4649537)
[»] chr4 (3 HSPs)
chr4 (592-711)||(52055128-52055247)
chr4 (592-711)||(1158235-1158354)
chr4 (613-711)||(49866671-49866769)
[»] chr3 (6 HSPs)
chr3 (591-711)||(49786392-49786512)
chr3 (586-711)||(47940820-47940945)
chr3 (592-711)||(8152977-8153098)
chr3 (592-711)||(8436876-8436995)
chr3 (592-710)||(29836751-29836868)
chr3 (598-692)||(48778972-48779066)
[»] chr2 (2 HSPs)
chr2 (592-711)||(13922185-13922304)
chr2 (595-711)||(11828960-11829076)
[»] chr8 (2 HSPs)
chr8 (597-708)||(3780342-3780453)
chr8 (592-711)||(4076924-4077043)
[»] chr1 (5 HSPs)
chr1 (592-711)||(30339636-30339755)
chr1 (592-711)||(51787272-51787391)
chr1 (592-709)||(20186823-20186940)
chr1 (592-692)||(43740406-43740506)
chr1 (614-711)||(9672952-9673046)
[»] chr6 (1 HSPs)
chr6 (592-711)||(33594499-33594618)
[»] scaffold0049 (2 HSPs)
scaffold0049 (167-199)||(73005-73037)
scaffold0049 (147-204)||(61111-61169)


Alignment Details
Target: chr5 (Bit Score: 603; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 48 - 711
Target Start/End: Complemental strand, 1502012 - 1501349
Alignment:
Q  48 agattggaagagcttgtaatctagtgaatgactacagatatttccttaaaacttaccgaatccattttcaatactataatttgttatacatcatacaaaa 147  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1502012 agattggaagagctagtaatctagtgaatgactacagatatttccttaaaacttaccgaatccattttcaatactataatttgttatacatcatacaaaa 1501913  T
Q  148 tgccctaggtcatgataagctatgctcaaatacttcaagaacgtgcaaaaatgaaaagcatgcatgttagctatacatcacaatagaacaccattcatct 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1501912 tgccctaggtcatgataagctatgctcaaatacttcaagaacgtgcaaaaatgaaaagcatgcatgttagctatacatcacaatagaacaccattcatct 1501813  T
Q  248 gttgaaaagaatgaatgtgaaactaggttgaatcaactttaaataataacaacaaaaggttaacttttgaaatccataaagccatgaaactctctcaaga 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1501812 gttgaaaagaatgaatgtgaaactaggttgaatcaactttaaataataacaacaaaaggttaacttttgaaatccataaagccatgaaactctctcaaga 1501713  T
Q  348 ttaggcacaccaccaagaaacttaacaaaattggcatatatatactagacaaatgttcttgaattcacattggagacacaagtaattgaagttcagagca 447  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1501712 ttagacacaccaccaagaaacttaacaaaattggcatatatatactagacaaatgttcttgaattcacattggagacacaagtaattgaagttcagagca 1501613  T
Q  448 atcctgagcaagtaaaagtttttcctcaatgnnnnnnnggtaacaacattgaatcaaatcattttgatgtttgaggatcctctaggctctaataaagctc 547  Q
    |||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1501612 atcctgagcaagtaaaagtttttccttaatgaaaaaaaggtaacaacattgaatcaaatcattttgatgtttgaggatcctctaggctctaataaagctc 1501513  T
Q  548 cctcttcaggtgcaaaagatttcgttactgtggttcataattttgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaa 647  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||    
T  1501512 cctcttcaggtgcaaaagatttcattactgtggttcataattttgagtggtgatacatgcagatccataggtgacatacacacttaaacctccacataaa 1501413  T
Q  648 catatgacatgtagcctaaaccccataaacactttgtctctcttctctttcattcatctctctc 711  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  1501412 catatgacatgtagcctagaccccatatacactttgtctctcttctctttcatccatctctctc 1501349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 25956059 - 25955940
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||||||||||    
T  25956059 gagtggtgatacatgcacactcataggtggcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctctt 25955960  T
Q  692 ctctttcattcatctctctc 711  Q
    |  |||||| ||||||||||    
T  25955959 ccttttcatccatctctctc 25955940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 593 - 711
Target Start/End: Complemental strand, 38280371 - 38280253
Alignment:
Q  593 agtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttc 692  Q
    |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||| ||  |||| |||||| |||||||||||||||||||    
T  38280371 agtggtgatacatgtacatccataggtggtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 38280272  T
Q  693 tctttcattcatctctctc 711  Q
    |||||||| ||||||||||    
T  38280271 tctttcatccatctctctc 38280253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 42250116 - 42250235
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    |||||||||||||||||||  ||||  || |||| ||||||||||||||||| |||||| |||||||| || || |||||| ||||||||||||||||||    
T  42250116 gagtggtgatacatgcacacccataaatgacatagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttgtctctctt 42250215  T
Q  692 ctctttcattcatctctctc 711  Q
    |  |||||| ||||||||||    
T  42250216 ccttttcatccatctctctc 42250235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 591 - 711
Target Start/End: Original strand, 7886354 - 7886474
Alignment:
Q  591 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctct 690  Q
    ||||||||||| |||||| | | ||||||| |||||||||||||||||||||| |||||| |||||||| ||||||| |||| | | | |||||||||||    
T  7886354 tgagtggtgattcatgcatacttataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctaaatcccacatatattttgtctctct 7886453  T
Q  691 tctctttcattcatctctctc 711  Q
    || |||||||  |||||||||    
T  7886454 tccctttcatatatctctctc 7886474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 1506746 - 1506686
Alignment:
Q  147 atgccctaggtcatgataagctatgctcaaatacttcaagaacgtgcaaaaatgaaaagca 207  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||| |||||||||||    
T  1506746 atgccctaggtcatgataacctctgctcaaatacttcaagaaagtgcaagaatgaaaagca 1506686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 710
Target Start/End: Original strand, 38951381 - 38951499
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||| |||||||||||||||||||| ||||||| | ||||||| ||| ||| ||| || ||| |||| || ||||   || ||||||||| ||| | ||    
T  38951381 gagtgatgatacatgcacattcatagatggcatatatacttaaatctcaacacaaatatgtgatatgtggcttaaatttcacaaacactttatctttttt 38951480  T
Q  692 ctctttcattcatctctct 710  Q
    | || |||| |||||||||    
T  38951481 ccctatcatccatctctct 38951499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 1502265 - 1502236
Alignment:
Q  5 actcatatcttttgagttcacaactttaag 34  Q
    ||||||||||||||||||||||||||||||    
T  1502265 actcatatcttttgagttcacaactttaag 1502236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 6e-42; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 496683 - 496802
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||| ||||||||||||||||||    
T  496683 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttgtctctctt 496782  T
Q  692 ctctttcattcatctctctc 711  Q
    ||||||||| ||||||||||    
T  496783 ctctttcatccatctctctc 496802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 591 - 711
Target Start/End: Original strand, 11765706 - 11765826
Alignment:
Q  591 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctct 690  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||  |||  |||||| |||||||||||||||||    
T  11765706 tgagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttgtctctct 11765805  T
Q  691 tctctttcattcatctctctc 711  Q
    |||||||||| ||||||||||    
T  11765806 tctctttcatccatctctctc 11765826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 590 - 711
Target Start/End: Complemental strand, 7527365 - 7527244
Alignment:
Q  590 ttgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctc 689  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |||||||| ||||| || |||||||||||||||||||     
T  7527365 ttgaggggtgatacatgcatattcattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttgtctctt 7527266  T
Q  690 ttctctttcattcatctctctc 711  Q
    || | |||||| ||||||||||    
T  7527265 ttttttttcatccatctctctc 7527244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 591 - 711
Target Start/End: Original strand, 2286457 - 2286577
Alignment:
Q  591 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctct 690  Q
    ||||| ||||||||||||||   || ||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||| |||||||||||||||||    
T  2286457 tgagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctct 2286556  T
Q  691 tctctttcattcatctctctc 711  Q
    ||  |||||| ||||||||||    
T  2286557 tccttttcatccatctctctc 2286577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 25186032 - 25185913
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||| ||||| ||||||||    
T  25186032 gagtggtgatgcatgcacactcataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatactttatctctctt 25185933  T
Q  692 ctctttcattcatctctctc 711  Q
    |  |||||| ||||||||||    
T  25185932 ccttttcatccatctctctc 25185913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 48057798 - 48057679
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||||||||||||| |||  ||||||||||||||| | |||||| ||||||||||||| ||||| ||  |||| |||||| ||||||||||||||||||    
T  48057798 gagtggtgatacatgtacacccataggtggcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 48057699  T
Q  692 ctctttcattcatctctctc 711  Q
    ||||||||| ||||||||||    
T  48057698 ctctttcatccatctctctc 48057679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 42535313 - 42535194
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||| ||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||  | || | |||| ||||||||||||||||||    
T  42535313 gagtgatgatatatgtacactcataggtgacatacacacttaaacctccacataaacatgtgacacgtgtcttatatcccacaaacactttgtctctctt 42535214  T
Q  692 ctctttcattcatctctctc 711  Q
    ||||||||| ||||||||||    
T  42535213 ctctttcatccatctctctc 42535194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 599 - 711
Target Start/End: Original strand, 23844642 - 23844754
Alignment:
Q  599 gatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctttc 698  Q
    ||||||||||||| |||||||  |||||||||| ||| |||||||||||||| ||||||||  |||| ||| || |||||||||||||||||||  ||||    
T  23844642 gatacatgcacatccataggtaacatacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttgtctctcttccttttc 23844741  T
Q  699 attcatctctctc 711  Q
    || ||||||||||    
T  23844742 atccatctctctc 23844754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 591 - 710
Target Start/End: Complemental strand, 31427362 - 31427241
Alignment:
Q  591 tgagtggtgatacatgcacattcataggtg--gcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctct 688  Q
    ||||||||||||||||||||| ||||||||  ||||||| | |||||||||| |||||| || |||||||| |  || || ||| |||||||||||||||    
T  31427362 tgagtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgacatgtggtttagactccacaaacactttgtctct 31427263  T
Q  689 cttctctttcattcatctctct 710  Q
    |||| || |||| |||||||||    
T  31427262 cttccctctcatccatctctct 31427241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 40855251 - 40855131
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagc-ctaaaccccataaacactttgtctctct 690  Q
    ||||| |||| |||||| || |||| |||| ||| ||||||||||||| ||| |||||| |||| ||| |  ||| ||| || ||||||||||||||| |    
T  40855251 gagtgatgatgcatgcatatccatatgtggtatatacacttaaacctctacacaaacatgtgacctgtgggtctagacctcacaaacactttgtctcttt 40855152  T
Q  691 tctctttcattcatctctctc 711  Q
    || ||||||||||||||||||    
T  40855151 tccctttcattcatctctctc 40855131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 647
Target Start/End: Complemental strand, 4649537 - 4649481
Alignment:
Q  591 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaa 647  Q
    |||||||||||| ||||| ||||||| |||||||||||| ||||| |||||||||||    
T  4649537 tgagtggtgatagatgcaaattcataagtggcatacacatttaaaactccacataaa 4649481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 52055247 - 52055128
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||| |||||| ||||||||||||||||||    
T  52055247 gagtggtgatacatgcacattcataggtggcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctctt 52055148  T
Q  692 ctctttcattcatctctctc 711  Q
    |  |||||| ||||||||||    
T  52055147 ccttttcatccatctctctc 52055128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 1158354 - 1158235
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||| ||||||||||||||  ||||  ||| |||||||||||||||||||| |||||| |||||||| ||||| |||| | ||||| ||||||||||||    
T  1158354 gagtgatgatacatgcacatcgatagaaggcgtacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttgtctctctt 1158255  T
Q  692 ctctttcattcatctctctc 711  Q
    | ||||||||||||||||||    
T  1158254 ccctttcattcatctctctc 1158235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 711
Target Start/End: Original strand, 49866671 - 49866769
Alignment:
Q  613 cataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctttcattcatctctctc 711  Q
    ||||||||| |||||| ||||||||| |||| ||| || ||||||||  | || ||| ||||||||||||||||||||||||||||||  |||||||||    
T  49866671 cataggtggtatacacgcttaaaccttcacacaaatatgtgacatgtgacttagaccacataaacactttgtctctcttctctttcatcgatctctctc 49866769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 591 - 711
Target Start/End: Original strand, 49786392 - 49786512
Alignment:
Q  591 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctct 690  Q
    |||| ||||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||| ||  |||| |||||| |||||||||||||||||    
T  49786392 tgagcggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctct 49786491  T
Q  691 tctctttcattcatctctctc 711  Q
    |||||||||||||||||||||    
T  49786492 tctctttcattcatctctctc 49786512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 586 - 711
Target Start/End: Original strand, 47940820 - 47940945
Alignment:
Q  586 aattttgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtc 685  Q
    |||| ||||| ||||||||||||||   || ||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||||    
T  47940820 aattatgagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtc 47940919  T
Q  686 tctcttctctttcattcatctctctc 711  Q
    |||||||  |||||| ||||||||||    
T  47940920 tctcttccttttcatccatctctctc 47940945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 8152977 - 8153098
Alignment:
Q  592 gagtggtgatacat--gcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctc 689  Q
    ||||||||||||||  |||||   ||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || ||| ||||||||||||||||    
T  8152977 gagtggtgatacatatgcacacctataggtggcatacacacctaaacctccacataaacatgtgacatgtggcctagactccacaaacactttgtctctc 8153076  T
Q  690 ttctctttcattcatctctctc 711  Q
    |||||||| || ||||||||||    
T  8153077 ttctcttttatccatctctctc 8153098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 8436995 - 8436876
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||||||||| ||| |||  ||||||||||||||||| ||||||||| ||||||| |||||||| ||  | || |||||| ||||||||||||||||||    
T  8436995 gagtggtgatatatgtacacccataggtggcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttgtctctctt 8436896  T
Q  692 ctctttcattcatctctctc 711  Q
    ||||||||| ||||||||||    
T  8436895 ctctttcatccatctctctc 8436876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 592 - 710
Target Start/End: Complemental strand, 29836868 - 29836751
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || | |||| |  |||| |||||| ||| ||||||||||||||    
T  29836868 gagtggtgatacatgcacactcataggtggcatacacacttaaacctccacacaaatatgtaacatatgacctacaccccacaaa-actttgtctctctt 29836770  T
Q  692 ctctttcattcatctctct 710  Q
    |||| |||||| |||||||    
T  29836769 ctctctcattcgtctctct 29836751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 598 - 692
Target Start/End: Complemental strand, 48779066 - 48778972
Alignment:
Q  598 tgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttc 692  Q
    |||||||||||||   ||||||||||||| || |||||| |||||||||| || |||||||| | ||| || ||||||||||||| |||||||||    
T  48779066 tgatacatgcacacctataggtggcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacactttatctctcttc 48778972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 13922185 - 13922304
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| ||||| ||  |||| |||||| ||||||||||||||||||    
T  13922185 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 13922284  T
Q  692 ctctttcattcatctctctc 711  Q
    ||||||||| ||||||||||    
T  13922285 ctctttcatccatctctctc 13922304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 595 - 711
Target Start/End: Original strand, 11828960 - 11829076
Alignment:
Q  595 tggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctc 694  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||  |||| |||||| |||||||||| |||||| |||    
T  11828960 tggtgagacatgcacactcataggtggcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttgcctctctcctc 11829059  T
Q  695 tttcattcatctctctc 711  Q
    |||||| ||||||||||    
T  11829060 tttcatccatctctctc 11829076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 597 - 708
Target Start/End: Complemental strand, 3780453 - 3780342
Alignment:
Q  597 gtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctt 696  Q
    |||||||||| |||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||| |||    
T  3780453 gtgatacatgtacatccataggtggcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttgtctctcttccctt 3780354  T
Q  697 tcattcatctct 708  Q
    |||| |||||||    
T  3780353 tcatccatctct 3780342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 4077043 - 4076924
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||| ||||||||||| |  ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||| ||||||||||||    
T  4077043 gagtgatgatacatgcatacccataggtggcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttgtctctctt 4076944  T
Q  692 ctctttcattcatctctctc 711  Q
    |  |||||| ||||||||||    
T  4076943 ccttttcatccatctctctc 4076924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 9e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 30339636 - 30339755
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||| |||||||||| ||||| ||  |||| |||||| ||||||||||||||||||    
T  30339636 gagtggtgatacatgtacacccataggtggcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 30339735  T
Q  692 ctctttcattcatctctctc 711  Q
    ||||||||| ||||||||||    
T  30339736 ctctttcatccatctctctc 30339755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 51787272 - 51787391
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||| ||   ||| |||||| ||||||||||||||||||    
T  51787272 gagtggtgatacatgtacatccataggtggcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttgtctctctt 51787371  T
Q  692 ctctttcattcatctctctc 711  Q
    ||||||||| ||||||||||    
T  51787372 ctctttcatgcatctctctc 51787391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 592 - 709
Target Start/End: Complemental strand, 20186940 - 20186823
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    ||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||| ||  |||| | |||| ||||||||||||||||||    
T  20186940 gagtggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttgtctctctt 20186841  T
Q  692 ctctttcattcatctctc 709  Q
    ||||||||| ||||||||    
T  20186840 ctctttcatccatctctc 20186823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 592 - 692
Target Start/End: Complemental strand, 43740506 - 43740406
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    |||||||||| |||| |||| ||||| |  ||| |||||||||||||||||| |||||| ||| |||| ||||||||| || ||||||||||||||||||    
T  43740506 gagtggtgatccatgaacatccatagatcacatgcacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttgtctctctt 43740407  T
Q  692 c 692  Q
    |    
T  43740406 c 43740406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 614 - 711
Target Start/End: Complemental strand, 9673046 - 9672952
Alignment:
Q  614 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctttcattcatctctctc 711  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||  |||| |  ||| ||||||  ||||||||||||||||||| ||||||||||    
T  9673046 ataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctaga-tccacaaacac--tgtctctcttctctttcatccatctctctc 9672952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 592 - 711
Target Start/End: Complemental strand, 33594618 - 33594499
Alignment:
Q  592 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 691  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||| |||| |||||| |||||||| ||||| |||||| ||| ||||||||||||||    
T  33594618 gagtagtgatacatgcacatccattggtggcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatactttgtctctctt 33594519  T
Q  692 ctctttcattcatctctctc 711  Q
    |  |||||| ||||||||||    
T  33594518 ccttttcatccatctctctc 33594499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 73005 - 73037
Alignment:
Q  167 ctatgctcaaatacttcaagaacgtgcaaaaat 199  Q
    |||||||||||||||||||||||||||||||||    
T  73005 ctatgctcaaatacttcaagaacgtgcaaaaat 73037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 61111 - 61169
Alignment:
Q  147 atgccctaggtcatgataagctatgctcaaata-cttcaagaacgtgcaaaaatgaaaa 204  Q
    ||||| ||||||||||| | |||||||||| || |||||||||||||||||||| ||||    
T  61111 atgccttaggtcatgatgacctatgctcaagtaacttcaagaacgtgcaaaaataaaaa 61169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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