View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_20 (Length: 308)
Name: NF21662_low_20
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 23177904 - 23178182
Alignment:
| Q |
13 |
atactactattccaattgatagcaattctcgctttatactagaagcgtctggggatcttaaataccaagcctggtatgaggaatctaagcaatggatttt |
112 |
Q |
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| T |
23177904 |
atactactattccaattgatagcacttctcgctttatactagaagcgtctggggatcttaaataccaagcctggtatgaggaatctaagcaatggatttt |
23178003 |
T |
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| Q |
113 |
tctacagtcatcaacgtgtgcgacaaacaattcatgtggannnnnnnccatttgtaatccgcaaactcctgacccttgtcaatgtctcagaggttttaaa |
212 |
Q |
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| T |
23178004 |
tctacggtcatcaacgtgtgtgacaaacaattcatgtggatttttttccatttgtaatccgcaaactcctgacccttgtcaatgtctcagaggttttaaa |
23178103 |
T |
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| Q |
213 |
cagtctagtgctggtggatgtgttaggataaagaagttgtcctgcaacaacaataacattatacatggatatttctcat |
291 |
Q |
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| T |
23178104 |
cagtctagtgctggtggatgtgttaggataaagaagttgtcctgcaacaacaataacattaaacatggatatttctcat |
23178182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 23187048 - 23187175
Alignment:
| Q |
25 |
caattgatagcaattctcgctttatactagaagcgtctggggatcttaaataccaagcctggtatgaggaatctaagcaatggatttttctacagtcatc |
124 |
Q |
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| T |
23187048 |
caattaatagcaattctcggtttatattagaagcgtctggggatcttaaataccaagcctggtccgaggaatataggcaatggatttttctacagtttta |
23187147 |
T |
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| Q |
125 |
aacgtgtgcgacaaacaattcatgtgga |
152 |
Q |
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| T |
23187148 |
tcagtgtgtgacaaacaattcatgtgga |
23187175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 201
Target Start/End: Complemental strand, 21182025 - 21181878
Alignment:
| Q |
54 |
gaagcgtctggggatcttaaataccaagcctggtatgaggaatctaagcaatggatttttctacagtcatcaacgtgtgcgacaaacaattcatgtggan |
153 |
Q |
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|||| ||||||||||||||||||||||| ||||| ||||||||||||| ||| ||| |||||| ||||| | ||| | ||||||||||| |||||| |
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| T |
21182025 |
gaagtgtctggggatcttaaataccaaggctggtcagaggaatctaagcgttgggtttctctacaatcatccaagtgcggaacaaacaattcttgtggaa |
21181926 |
T |
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| Q |
154 |
nnnnnnccatttgtaatccgcaaactcctgacccttgtcaatgtctca |
201 |
Q |
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| T |
21181925 |
ttttttccatttgtaattcgcaagatcgcgacccttgtcactgtctca |
21181878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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