View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_27 (Length: 252)
Name: NF21662_low_27
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 8555238 - 8555163
Alignment:
| Q |
16 |
atatatataacctaccaatacaatacattacatgcagtagtactctctttcacactcacctaccctctctattcta |
91 |
Q |
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| T |
8555238 |
atatatataacctaccaatacaatacattacatgcagtagtactctctttcacactcacctaccctctctattcta |
8555163 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 8555043 - 8555015
Alignment:
| Q |
211 |
tgggattatgggaagcagacaaagtagta |
239 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
8555043 |
tgggattatgggaagcagacaaagtagta |
8555015 |
T |
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