View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_28 (Length: 251)
Name: NF21662_low_28
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_28 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 36083128 - 36083372
Alignment:
| Q |
13 |
aatatatagtttcacaaaaagattcacaaaacttttacatat--atatataggaaggaagattatcataaattaaagttgcaaaaatgacattttacaac |
110 |
Q |
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| T |
36083128 |
aatatatagtttcacaaaaagattcacaaaacttttacatatatatatataggaaggaagattatcataaattaaagttgcaaaaatgacattttacaac |
36083227 |
T |
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| Q |
111 |
caacaaaattgaattcagca----gttctaattacaaagtcaatctcttaccaccgagctaaagttaaaggaaaaagaagcgtgtatgacaaatttcaaa |
206 |
Q |
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| T |
36083228 |
caagaaaattgaattaagtagtgtgttccaattacaaagtgaatctcttaccaccaagctaaagttaaagaaaaaagaagcgtgtatgacaaatttcaaa |
36083327 |
T |
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| Q |
207 |
tagcaattttctacttacaaattcaaacacaattattttgaataa |
251 |
Q |
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| T |
36083328 |
tagcaattttctacttacaaattcaaacacaattattttgaataa |
36083372 |
T |
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