View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21662_low_29 (Length: 251)

Name: NF21662_low_29
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21662_low_29
NF21662_low_29
[»] chr3 (9 HSPs)
chr3 (114-223)||(33175437-33175546)
chr3 (21-113)||(33175573-33175664)
chr3 (55-107)||(1320143-1320195)
chr3 (55-107)||(8536467-8536519)
chr3 (55-98)||(2107947-2107990)
chr3 (67-97)||(52708807-52708837)
chr3 (55-107)||(2472782-2472835)
chr3 (55-98)||(5324722-5324766)
chr3 (55-106)||(41152493-41152545)
[»] chr2 (11 HSPs)
chr2 (55-107)||(23457589-23457641)
chr2 (55-105)||(28737782-28737832)
chr2 (55-107)||(12966419-12966472)
chr2 (55-107)||(33051561-33051613)
chr2 (65-107)||(1218391-1218433)
chr2 (55-105)||(5171679-5171729)
chr2 (55-107)||(4184871-4184924)
chr2 (55-107)||(33053360-33053412)
chr2 (65-107)||(32163875-32163918)
chr2 (65-97)||(19582063-19582095)
chr2 (55-106)||(32162063-32162115)
[»] chr7 (20 HSPs)
chr7 (51-107)||(1365614-1365671)
chr7 (55-107)||(8916471-8916523)
chr7 (55-108)||(35814813-35814866)
chr7 (55-107)||(1369748-1369800)
chr7 (55-107)||(6451844-6451896)
chr7 (55-103)||(11000920-11000968)
chr7 (55-107)||(11228924-11228976)
chr7 (55-107)||(24840086-24840138)
chr7 (55-98)||(18790266-18790309)
chr7 (65-106)||(4955968-4956009)
chr7 (55-107)||(1786626-1786678)
chr7 (65-105)||(5934549-5934589)
chr7 (55-106)||(8063890-8063941)
chr7 (71-105)||(8915279-8915313)
chr7 (55-107)||(2767873-2767926)
chr7 (70-107)||(4133398-4133435)
chr7 (55-91)||(11228679-11228716)
chr7 (63-107)||(19404211-19404256)
chr7 (58-107)||(27142609-27142658)
chr7 (55-107)||(1690225-1690277)
[»] chr8 (15 HSPs)
chr8 (54-106)||(24577621-24577673)
chr8 (55-107)||(24730975-24731027)
chr8 (55-107)||(30440680-30440732)
chr8 (55-107)||(14130108-14130160)
chr8 (55-107)||(26377974-26378026)
chr8 (65-107)||(16598191-16598233)
chr8 (59-107)||(16598109-16598157)
chr8 (55-107)||(26374843-26374895)
chr8 (55-105)||(2687687-2687737)
chr8 (55-96)||(20693753-20693794)
chr8 (55-104)||(25479499-25479548)
chr8 (65-98)||(30442479-30442512)
chr8 (55-107)||(2189815-2189867)
chr8 (59-107)||(10629216-10629264)
chr8 (55-107)||(24578871-24578923)
[»] chr4 (14 HSPs)
chr4 (55-107)||(7634023-7634075)
chr4 (55-107)||(13991473-13991525)
chr4 (59-105)||(10494848-10494894)
chr4 (59-107)||(3765305-3765353)
chr4 (55-107)||(13990771-13990823)
chr4 (55-94)||(15848361-15848400)
chr4 (55-98)||(18689615-18689658)
chr4 (55-107)||(28897913-28897966)
chr4 (55-103)||(9260520-9260568)
chr4 (65-105)||(21433667-21433707)
chr4 (55-98)||(18657136-18657179)
chr4 (71-105)||(7635235-7635269)
chr4 (70-107)||(17255007-17255044)
chr4 (55-107)||(22486868-22486920)
[»] chr1 (13 HSPs)
chr1 (53-108)||(9195034-9195089)
chr1 (55-107)||(10925683-10925735)
chr1 (55-107)||(10927137-10927189)
chr1 (55-107)||(12944059-12944111)
chr1 (55-105)||(50713658-50713708)
chr1 (55-107)||(9030959-9031012)
chr1 (55-98)||(8967898-8967941)
chr1 (55-105)||(23987517-23987567)
chr1 (55-107)||(28660840-28660893)
chr1 (62-107)||(28661168-28661213)
chr1 (55-107)||(8221431-8221483)
chr1 (55-98)||(10928241-10928284)
chr1 (65-107)||(9199319-9199361)
[»] scaffold0251 (1 HSPs)
scaffold0251 (55-107)||(9645-9697)
[»] chr5 (2 HSPs)
chr5 (55-95)||(26140298-26140338)
chr5 (53-107)||(18252359-18252413)
[»] chr6 (11 HSPs)
chr6 (55-98)||(34373880-34373923)
chr6 (59-105)||(1127199-1127245)
chr6 (55-107)||(11658874-11658927)
chr6 (55-107)||(18727939-18727991)
chr6 (55-105)||(12882067-12882118)
chr6 (55-106)||(27822212-27822264)
chr6 (65-107)||(32361311-32361354)
chr6 (65-107)||(14216838-14216880)
chr6 (55-105)||(24664209-24664259)
chr6 (56-88)||(8049060-8049092)
chr6 (55-107)||(24443165-24443217)
[»] scaffold0240 (1 HSPs)
scaffold0240 (55-107)||(15990-16042)
[»] scaffold0090 (1 HSPs)
scaffold0090 (55-104)||(15158-15207)
[»] scaffold0024 (2 HSPs)
scaffold0024 (66-107)||(144022-144063)
scaffold0024 (55-106)||(145677-145729)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 33175546 - 33175437
Alignment:
Q  114 atttgatgactatgattgaatgtcaatgtaaaaaacacttacaccaacaatgcttataaattaaatannnnnnnaatataacttagtggttaaattggag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||| ||||||||||||||    
T  33175546 atttgatgactatgattgaatgtcaatgtaaaaaacacttacaccaacaatgcttataaattaaatatttttttaatataacttattggttaaattggag 33175447  T
Q  214 agatggtgat 223  Q
    ||||||||||    
T  33175446 agatggtgat 33175437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 33175664 - 33175573
Alignment:
Q  21 gtcccccgagctcccctcagtggcccaacaccataatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagtcagcta 113  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||||||||||| |||||    
T  33175664 gtcccccgagctcccctcagtggcccaacaccataatccactaaaatttgaaaaaactct-taaaatattattgaatggataaaagttagcta 33175573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 1320143 - 1320195
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||| ||||||||    
T  1320143 aatccaccagaaatagagaaaattctctaaaatattattgaatgaataaaagt 1320195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 8536467 - 8536519
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||||| |||||||||||||||||||  |||| ||||||||    
T  8536467 aatccaccagaaattgaggaaactctctaaaatattatctaatgaataaaagt 8536519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 2107947 - 2107990
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatg 98  Q
    ||||||||| | |||||||||||||||||||||| |||||||||    
T  2107947 aatccaccagagattgagaaaactctctaaaatactattgaatg 2107990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 52708837 - 52708807
Alignment:
Q  67 attgagaaaactctctaaaatattattgaat 97  Q
    |||||||||||||||||||||||||||||||    
T  52708837 attgagaaaactctctaaaatattattgaat 52708807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 2472782 - 2472835
Alignment:
Q  55 aatccaccaaaaattgagaaaa-ctctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| || ||||||||    
T  2472782 aatccaccagaaattgagaaaaactcactaaaatattattgattgaataaaagt 2472835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 5324722 - 5324766
Alignment:
Q  55 aatccacca-aaaattgagaaaactctctaaaatattattgaatg 98  Q
    ||||||||| |||||||||||||||||  ||||||||||||||||    
T  5324722 aatccaccagaaaattgagaaaactcttgaaaatattattgaatg 5324766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 41152545 - 41152493
Alignment:
Q  55 aatccaccaaaaattgagaaaactctct-aaaatattattgaatggataaaag 106  Q
    ||||||| |||||||||||||||||| | |||||||||| ||||| |||||||    
T  41152545 aatccacaaaaaattgagaaaactctttaaaaatattatcgaatgaataaaag 41152493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 23457641 - 23457589
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23457641 aatccaccaaaaattgagaaaactctctaaaatattattgaatgaataaaagt 23457589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 28737832 - 28737782
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaa 105  Q
    |||||| || |||||||||||||||||||||||||||||||||| ||||||    
T  28737832 aatccaacagaaattgagaaaactctctaaaatattattgaatgaataaaa 28737782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 12966472 - 12966419
Alignment:
Q  55 aatccaccaaaaattgagaaaa-ctctctaaaatattattgaatggataaaagt 107  Q
    |||||||||||||||||||||| ||||||||||||||||||| || ||||||||    
T  12966472 aatccaccaaaaattgagaaaaactctctaaaatattattgattgaataaaagt 12966419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 33051613 - 33051561
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||| ||||    
T  33051613 aatccactagaaattgagaaaactctctaaaatattattgaatgaatataagt 33051561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 1218391 - 1218433
Alignment:
Q  65 aaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||||||||| ||||||||||||||||||||| ||||||||    
T  1218391 aaattgagaaaattctctaaaatattattgaatgaataaaagt 1218433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 5171679 - 5171729
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaa 105  Q
    ||||||| | ||||||||||||||||||||||||||||| |||| ||||||    
T  5171679 aatccactagaaattgagaaaactctctaaaatattatttaatgaataaaa 5171729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 4184924 - 4184871
Alignment:
Q  55 aatccaccaaaaattgagaaaa-ctctctaaaatattattgaatggataaaagt 107  Q
    ||||||| | |||||||||||| |||||||||||||||||||||| ||||||||    
T  4184924 aatccacgagaaattgagaaaaactctctaaaatattattgaatgaataaaagt 4184871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 33053412 - 33053360
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||| |||| ||||||||||||  |||||||||||||||||||| ||||||||    
T  33053412 aatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagt 33053360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 32163875 - 32163918
Alignment:
Q  65 aaattgagaaaact-ctctaaaatattattgaatggataaaagt 107  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  32163875 aaattgagaaaacttctctaaaatattattgaatgaataaaagt 32163918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 19582095 - 19582063
Alignment:
Q  65 aaattgagaaaactctctaaaatattattgaat 97  Q
    ||||||| |||||||||||||||||||||||||    
T  19582095 aaattgaaaaaactctctaaaatattattgaat 19582063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 32162063 - 32162115
Alignment:
Q  55 aatccaccaaaaattgagaaaact-ctctaaaatattattgaatggataaaag 106  Q
    ||||||||| ||| |||||||||| |||||||||||||||||||  |||||||    
T  32162063 aatccaccagaaactgagaaaacttctctaaaatattattgaataaataaaag 32162115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 1365671 - 1365614
Alignment:
Q  51 ccataatccaccaaaaattgagaaaa-ctctctaaaatattattgaatggataaaagt 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  1365671 ccataatccaccaaaaattgagaaaaactctctaaaatattattgaatgaataaaagt 1365614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 8916471 - 8916523
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  8916471 aatccaccagaaattgagaaaactctctaaaatattattgaatgaataaaagt 8916523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 35814866 - 35814813
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagtc 108  Q
    |||| |||| |||||||||||||||||||||||||||||||||| |||||||||    
T  35814866 aatctaccataaattgagaaaactctctaaaatattattgaatgaataaaagtc 35814813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 1369800 - 1369748
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||||||||||||| ||||||||||||||||  ||||||||    
T  1369800 aatccaccagaaattgagaaaactctataaaatattattgaattaataaaagt 1369748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 6451844 - 6451896
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||| |||||||||| |||||||||||||||||||||||||| || |||||    
T  6451844 aatccaacaaaaattgaaaaaactctctaaaatattattgaatgaattaaagt 6451896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 11000920 - 11000968
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataa 103  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  11000920 aatccaccagaaattgggaaaactctctaaaatattattgaatgaataa 11000968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 11228976 - 11228924
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| ||||||| ||||||||||||||||||||||| || ||||||||    
T  11228976 aatccaccagaaattgataaaactctctaaaatattattgagtgaataaaagt 11228924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 24840138 - 24840086
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| ||||||||||||||||||||||||||||| |||  ||||||||    
T  24840138 aatccaccagaaattgagaaaactctctaaaatattattcaataaataaaagt 24840086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 18790266 - 18790309
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatg 98  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||    
T  18790266 aatccaccagaaattgagaaaactctctaaaatattactgaatg 18790309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 4955968 - 4956009
Alignment:
Q  65 aaattgagaaaactctctaaaatattattgaatggataaaag 106  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  4955968 aaattgagaaaactccctaaaatattattgaatgaataaaag 4956009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 1786678 - 1786626
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||| || |||||| |||||||||||||||||||||| |||| ||||||||    
T  1786678 aatccatcagaaattgcgaaaactctctaaaatattatttaatgaataaaagt 1786626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 5934589 - 5934549
Alignment:
Q  65 aaattgagaaaactctctaaaatattattgaatggataaaa 105  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  5934589 aaattgagaaaattctctaaaatattattgaatgaataaaa 5934549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 8063890 - 8063941
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaag 106  Q
    ||||||| | |||||||||||| ||||||||||||||||||||  |||||||    
T  8063890 aatccactagaaattgagaaaattctctaaaatattattgaattaataaaag 8063941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 8915279 - 8915313
Alignment:
Q  71 agaaaactctctaaaatattattgaatggataaaa 105  Q
    |||||||||||||||||||||||||||| ||||||    
T  8915279 agaaaactctctaaaatattattgaatgaataaaa 8915313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 2767926 - 2767873
Alignment:
Q  55 aatccaccaaaaattgagaaaa-ctctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||||||||| ||||||||||||||||| | || ||||||||    
T  2767926 aatccaccagaaattgagaaaaactctctaaaatattattaattgaataaaagt 2767873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 4133398 - 4133435
Alignment:
Q  70 gagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  4133398 gagaaaactctctaaaatattattgaatgaatataagt 4133435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 11228716 - 11228679
Alignment:
Q  55 aatccacca-aaaattgagaaaactctctaaaatatta 91  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  11228716 aatccaccagaaaattgagaaaactctctaaaatatta 11228679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 19404211 - 19404256
Alignment:
Q  63 aaaaattgagaaaactctctaaaata-ttattgaatggataaaagt 107  Q
    ||||||||| |||||||||||||||| |||||||||| ||||||||    
T  19404211 aaaaattgaaaaaactctctaaaatatttattgaatgaataaaagt 19404256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 27142658 - 27142609
Alignment:
Q  58 ccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||| |||||||||||||||||| |||||||||| |||  ||||||||    
T  27142658 ccaccagaaattgagaaaactctctgaaatattattcaattaataaaagt 27142609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 1690225 - 1690277
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||| || |||||||||||| ||||||||||| |||| |||| ||||||||    
T  1690225 aatccatcagaaattgagaaaattctctaaaatagtatttaatgaataaaagt 1690277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 24577621 - 24577673
Alignment:
Q  54 taatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaag 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  24577621 taatccaccagaaattgagaaaactctctaaaatattattgaatgaataaaag 24577673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 24731027 - 24730975
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  24731027 aatccatcaaaaattgagaaaactctctaaaatattattgaatgaataaaagt 24730975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 30440732 - 30440680
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  30440732 aatccaccagaaattgagaaaactctctaaaatattattgaatgaataaaagt 30440680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 14130160 - 14130108
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  14130160 aatccaccagaaattgagaaaactctccaaaatattattgaatgaataaaagt 14130108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 26378026 - 26377974
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  26378026 aatccactagaaattgagaaaactctctaaaatattattgaatgaataaaagt 26377974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 16598233 - 16598191
Alignment:
Q  65 aaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  16598233 aaattgagaaaactctctaaaatattattgaatgaataaaagt 16598191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 16598157 - 16598109
Alignment:
Q  59 caccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||| ||| |||||||||||||||||||||||||||||| ||||||||    
T  16598157 caccagaaactgagaaaactctctaaaatattattgaatgaataaaagt 16598109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 26374895 - 26374843
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||    
T  26374895 aatccaccagaaattaagaaaactctctaaattattattgaatgaataaaagt 26374843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 2687737 - 2687687
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaa 105  Q
    ||||||| | |||||||||||||||| | ||||||||||||||| ||||||    
T  2687737 aatccacaagaaattgagaaaactctttgaaatattattgaatgaataaaa 2687687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 20693794 - 20693753
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaa 96  Q
    |||||| || ||||||||||||||||||||| ||||||||||    
T  20693794 aatccatcagaaattgagaaaactctctaaagtattattgaa 20693753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 25479499 - 25479548
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaa 104  Q
    ||||||||| || ||||||||||||||| |||| |||||||||| |||||    
T  25479499 aatccaccagaatttgagaaaactctctgaaattttattgaatgaataaa 25479548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 30442512 - 30442479
Alignment:
Q  65 aaattgagaaaactctctaaaatattattgaatg 98  Q
    |||||||||||||||| |||||||||||||||||    
T  30442512 aaattgagaaaactctttaaaatattattgaatg 30442479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 2189815 - 2189867
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||||||| ||||||||  ||||||| ||||||||| || ||||||||    
T  2189815 aatccaccaaaaaatgagaaaaaactctaaagtattattgattgaataaaagt 2189867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 10629216 - 10629264
Alignment:
Q  59 caccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||||||||||||||| | |||||||||||||| || | ||||||||    
T  10629216 caccaaaaattgagaaaattttctaaaatattatttaacgaataaaagt 10629264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 24578871 - 24578923
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||| | |||||| |||||||||||||||||||||| |||  ||||||||    
T  24578871 aatccactagaaattgtgaaaactctctaaaatattatttaataaataaaagt 24578923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 7634075 - 7634023
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  7634075 aatccaccagaaattgagaaaactctctaaaatattattgaatgaataaaagt 7634023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 13991473 - 13991525
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| || ||||||||||||||||||||||||||||||| ||||||||    
T  13991473 aatccaccagaatttgagaaaactctctaaaatattattgaatgaataaaagt 13991525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 10494894 - 10494848
Alignment:
Q  59 caccaaaaattgagaaaactctctaaaatattattgaatggataaaa 105  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||    
T  10494894 caccagaaattgagaaaactctctaaaatattattgaatgaataaaa 10494848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 3765305 - 3765353
Alignment:
Q  59 caccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  3765305 caccaaaaattgagaaaactctcaaaaatattattgaataaataaaagt 3765353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 13990771 - 13990823
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||| || ||||||| |||||||||||||||||||||||||| ||||||||    
T  13990771 aatccatcagaaattgaaaaaactctctaaaatattattgaatgaataaaagt 13990823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 15848400 - 15848361
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattg 94  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  15848400 aatccaccaaaaattgagaaaactctctaaaatactattg 15848361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 18689615 - 18689658
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatg 98  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  18689615 aatccaccagaaattgagaaaactctataaaatattattgaatg 18689658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 28897966 - 28897913
Alignment:
Q  55 aatccacca-aaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||    
T  28897966 aatccaccagaaaattgagaaaagtctttaaaatattattgaatgaataaaagt 28897913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 9260568 - 9260520
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataa 103  Q
    ||||||||| |||||||||||||| |||||||||| |||||||| ||||    
T  9260568 aatccaccagaaattgagaaaactatctaaaatataattgaatgaataa 9260520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 21433667 - 21433707
Alignment:
Q  65 aaattgagaaaactctctaaaatattattgaatggataaaa 105  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  21433667 aaattgagaaaattctctaaaatattattgaatgaataaaa 21433707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 18657136 - 18657179
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatg 98  Q
    ||||||||  |||||||||||||||| |||||||||||||||||    
T  18657136 aatccaccggaaattgagaaaactctataaaatattattgaatg 18657179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 7635269 - 7635235
Alignment:
Q  71 agaaaactctctaaaatattattgaatggataaaa 105  Q
    |||||||||||||||||||||||||||| ||||||    
T  7635269 agaaaactctctaaaatattattgaatgaataaaa 7635235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 17255007 - 17255044
Alignment:
Q  70 gagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  17255007 gagaaaactctctaaaatattattgaatgaatataagt 17255044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 22486868 - 22486920
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||||||||||||||| ||| ||||| ||||  ||||||||    
T  22486868 aatccaccagaaattgagaaaactctctgaaacattatggaataaataaaagt 22486920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 9195034 - 9195089
Alignment:
Q  53 ataatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagtc 108  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  9195034 ataatccaccaaaaattgaaaaaactctctaaagtattattgaatgaataaaagtc 9195089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 10925735 - 10925683
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||||| |||||||| |||||||||||||||||||||||||| ||||||||    
T  10925735 aatccaccgaaaattgaaaaaactctctaaaatattattgaatgaataaaagt 10925683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 10927189 - 10927137
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  10927189 aatccaccagaaattgagaaaactctctaaaatattatttaatgaataaaagt 10927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 12944111 - 12944059
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||||||||||||||||||||| ||||||||| ||||||||    
T  12944111 aatccaccagaaattgagaaaactctctaaaataatattgaatgaataaaagt 12944059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 50713708 - 50713658
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaa 105  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| ||||||    
T  50713708 aatccaccagaaattgagaaaactctcaaaaatattattgaatgaataaaa 50713658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 9031012 - 9030959
Alignment:
Q  55 aatccaccaaaaattgagaaaact-ctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  9031012 aatccaccataaattgagaaaacttctctaaaatattattgaatgaataaaagt 9030959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 8967898 - 8967941
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatg 98  Q
    |||||||||||||||| ||||||||||| |||||||||||||||    
T  8967898 aatccaccaaaaattgtgaaaactctctgaaatattattgaatg 8967941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 23987567 - 23987517
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaa 105  Q
    ||||||||| ||||||||| ||||||||||||||||||||| || ||||||    
T  23987567 aatccaccagaaattgagataactctctaaaatattattgattgaataaaa 23987517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 28660840 - 28660893
Alignment:
Q  55 aatccacca-aaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||| |||||||||||||||||||||||||||  ||||||||    
T  28660840 aatccaccagaaaatttagaaaactctctaaaatattattgaattaataaaagt 28660893  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 28661168 - 28661213
Alignment:
Q  62 caaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||||    
T  28661168 caaaaaatgagaaaactctctaaaatattgttgaacggataaaagt 28661213  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 8221483 - 8221431
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||||||||||||| | |||||| |||||||| ||||||||    
T  8221483 aatccaccagaaattgagaaaactctttgaaatatcattgaatgaataaaagt 8221431  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 10928284 - 10928241
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatg 98  Q
    ||||||| | |||||||||||||||||||||||| |||||||||    
T  10928284 aatccactataaattgagaaaactctctaaaatactattgaatg 10928241  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 9199319 - 9199361
Alignment:
Q  65 aaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||| |||||||||||||||||||||||| | ||||||||    
T  9199319 aaattgaaaaaactctctaaaatattattgaaagaataaaagt 9199361  T

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Target: scaffold0251 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 9697 - 9645
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| ||||||||    
T  9697 aatccaccagaaattgagaaaactctctgaaatattattgaatgaataaaagt 9645  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 26140338 - 26140298
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattga 95  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26140338 aatccaccaaaaattgagaaaactctctaaaatattattga 26140298  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 18252413 - 18252359
Alignment:
Q  53 ataatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| | |||||||||||||||| ||||||||||||||||| ||| ||||    
T  18252413 ataatccactagaaattgagaaaactctttaaaatattattgaatgaatagaagt 18252359  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 34373880 - 34373923
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatg 98  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  34373880 aatccaccagaaattgagaaaactctctaaaatattattgaatg 34373923  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 1127245 - 1127199
Alignment:
Q  59 caccaaaaattgagaaaactctctaaaatattattgaatggataaaa 105  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  1127245 caccaaaaattgagaaaactctctaaaataatattgaatgaataaaa 1127199  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 11658927 - 11658874
Alignment:
Q  55 aatccaccaaaaattgagaaaa-ctctctaaaatattattgaatggataaaagt 107  Q
    |||||||||||||||||||||| ||||||||||||||||||| || ||||||||    
T  11658927 aatccaccaaaaattgagaaaaactctctaaaatattattgattgaataaaagt 11658874  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 18727939 - 18727991
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| ||||||||||||||||||||||||| ||||| || ||||||||    
T  18727939 aatccaccagaaattgagaaaactctctaaaatataattgattgaataaaagt 18727991  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 12882118 - 12882067
Alignment:
Q  55 aatccaccaaaaattgagaaaa-ctctctaaaatattattgaatggataaaa 105  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| ||||||    
T  12882118 aatccaccagaaattgagaaaaactctctaaaatattattgaatgaataaaa 12882067  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 27822212 - 27822264
Alignment:
Q  55 aatccaccaaaaattgagaaaa-ctctctaaaatattattgaatggataaaag 106  Q
    ||||||||| |||||||||||| ||||||||||||||||||| || |||||||    
T  27822212 aatccaccagaaattgagaaaaactctctaaaatattattgattgaataaaag 27822264  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 32361354 - 32361311
Alignment:
Q  65 aaattgagaaaa-ctctctaaaatattattgaatggataaaagt 107  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
T  32361354 aaattgagaaaaactctctaaaatattattgaatgaataaaagt 32361311  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 14216880 - 14216838
Alignment:
Q  65 aaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||||||||||||||||| ||||||||||||||  ||||||||    
T  14216880 aaattgagaaaactctctgaaatattattgaataaataaaagt 14216838  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 24664259 - 24664209
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaa 105  Q
    ||||||||||| ||| |||||||||||| |||||||||| |||| ||||||    
T  24664259 aatccaccaaagattaagaaaactctctgaaatattattaaatgaataaaa 24664209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 8049060 - 8049092
Alignment:
Q  56 atccaccaaaaattgagaaaactctctaaaata 88  Q
    |||||||| ||||||||||||||||||||||||    
T  8049060 atccaccagaaattgagaaaactctctaaaata 8049092  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 24443165 - 24443217
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    |||| |||| ||||| ||||||||||||  |||||||||||||| ||||||||    
T  24443165 aatcaaccagaaattaagaaaactctctgcaatattattgaatgaataaaagt 24443217  T

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Target: scaffold0240 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 16042 - 15990
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||| ||||| |||||||||| ||||||||||||||||| ||||||||    
T  16042 aatccaccagaaatttagaaaactctataaaatattattgaatgaataaaagt 15990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 15158 - 15207
Alignment:
Q  55 aatccaccaaaaattgagaaaactctctaaaatattattgaatggataaa 104  Q
    ||||||||| ||||||||||||  |||||||||||||||||||| |||||    
T  15158 aatccaccagaaattgagaaaatcctctaaaatattattgaatgaataaa 15207  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 144022 - 144063
Alignment:
Q  66 aattgagaaaactctctaaaatattattgaatggataaaagt 107  Q
    ||||||||||||||||||||||||||||||||  ||||||||    
T  144022 aattgagaaaactctctaaaatattattgaataaataaaagt 144063  T

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Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 145729 - 145677
Alignment:
Q  55 aatccaccaaaaattgagaaaactc-tctaaaatattattgaatggataaaag 106  Q
    |||||||||||||||||||||| |  ||||||||||||||||||| |||||||    
T  145729 aatccaccaaaaattgagaaaaattatctaaaatattattgaatgaataaaag 145677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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