View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21662_low_30 (Length: 246)

Name: NF21662_low_30
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21662_low_30
NF21662_low_30
[»] chr5 (11 HSPs)
chr5 (1-240)||(36333004-36333243)
chr5 (76-210)||(34407146-34407280)
chr5 (78-210)||(2453995-2454127)
chr5 (8-210)||(22036571-22036770)
chr5 (78-210)||(30762114-30762246)
chr5 (78-210)||(19686873-19687005)
chr5 (78-210)||(28565229-28565361)
chr5 (78-210)||(21334990-21335122)
chr5 (78-210)||(26548779-26548911)
chr5 (28-239)||(18016940-18017151)
chr5 (76-188)||(22939705-22939817)
[»] chr7 (11 HSPs)
chr7 (1-210)||(17865787-17865996)
chr7 (78-210)||(22231915-22232047)
chr7 (78-210)||(22254692-22254824)
chr7 (6-210)||(45289691-45289895)
chr7 (8-210)||(1636137-1636336)
chr7 (8-183)||(20434625-20434797)
chr7 (6-210)||(26461150-26461354)
chr7 (76-210)||(4543497-4543631)
chr7 (76-210)||(37414704-37414838)
chr7 (76-172)||(18973194-18973290)
chr7 (77-172)||(13907090-13907185)
[»] chr4 (13 HSPs)
chr4 (76-210)||(649980-650114)
chr4 (1-210)||(646628-646837)
chr4 (76-210)||(5671271-5671405)
chr4 (76-210)||(56196229-56196363)
chr4 (82-210)||(15404387-15404515)
chr4 (78-210)||(52005803-52005934)
chr4 (76-210)||(22883687-22883821)
chr4 (76-210)||(22935351-22935485)
chr4 (6-210)||(49639037-49639241)
chr4 (76-210)||(7394147-7394281)
chr4 (85-210)||(19825020-19825145)
chr4 (76-193)||(26062197-26062314)
chr4 (80-151)||(22092521-22092592)
[»] chr8 (10 HSPs)
chr8 (1-210)||(12574779-12574988)
chr8 (80-210)||(18825187-18825317)
chr8 (76-210)||(22173234-22173368)
chr8 (76-210)||(25594180-25594314)
chr8 (76-210)||(33879882-33880016)
chr8 (76-210)||(23644527-23644661)
chr8 (76-210)||(39659226-39659360)
chr8 (78-206)||(23946428-23946556)
chr8 (76-210)||(31982051-31982185)
chr8 (6-168)||(12583755-12583917)
[»] chr6 (12 HSPs)
chr6 (6-210)||(14793000-14793204)
chr6 (76-209)||(32110393-32110526)
chr6 (78-210)||(14966920-14967052)
chr6 (1-183)||(15535672-15535854)
chr6 (76-210)||(23381456-23381590)
chr6 (76-210)||(12982946-12983080)
chr6 (114-210)||(13020587-13020682)
chr6 (114-210)||(28893796-28893892)
chr6 (6-168)||(23841991-23842153)
chr6 (76-168)||(18140547-18140639)
chr6 (76-168)||(22958453-22958545)
chr6 (76-168)||(23829847-23829939)
[»] chr3 (15 HSPs)
chr3 (8-183)||(26821491-26821666)
chr3 (78-210)||(2776275-2776407)
chr3 (78-210)||(28328142-28328274)
chr3 (76-207)||(13555901-13556032)
chr3 (76-210)||(10882263-10882397)
chr3 (78-200)||(24126291-24126413)
chr3 (82-206)||(10960607-10960731)
chr3 (82-206)||(10964114-10964238)
chr3 (76-210)||(47052254-47052388)
chr3 (78-210)||(16183959-16184091)
chr3 (83-210)||(9155512-9155639)
chr3 (91-210)||(18644056-18644175)
chr3 (81-210)||(55034270-55034399)
chr3 (6-159)||(19303900-19304053)
chr3 (48-190)||(11603238-11603380)
[»] chr1 (5 HSPs)
chr1 (31-210)||(13493865-13494044)
chr1 (76-210)||(22456008-22456142)
chr1 (8-210)||(28141298-28141497)
chr1 (8-210)||(21913681-21913880)
chr1 (76-210)||(49717082-49717216)
[»] scaffold0214 (1 HSPs)
scaffold0214 (76-210)||(20750-20884)
[»] scaffold0146 (1 HSPs)
scaffold0146 (28-210)||(36521-36703)
[»] scaffold0005 (1 HSPs)
scaffold0005 (82-210)||(293707-293835)
[»] scaffold0520 (1 HSPs)
scaffold0520 (76-210)||(11670-11804)
[»] scaffold0360 (1 HSPs)
scaffold0360 (78-210)||(3149-3281)
[»] scaffold0134 (1 HSPs)
scaffold0134 (78-210)||(7708-7840)
[»] chr2 (9 HSPs)
chr2 (8-210)||(35077626-35077825)
chr2 (76-210)||(25958997-25959131)
chr2 (30-210)||(24235778-24235958)
chr2 (82-210)||(45454545-45454673)
chr2 (76-210)||(9187944-9188077)
chr2 (76-210)||(25871456-25871590)
chr2 (76-210)||(1505935-1506069)
chr2 (1-181)||(13613981-13614161)
chr2 (114-210)||(16790077-16790173)
[»] scaffold0014 (1 HSPs)
scaffold0014 (76-210)||(224410-224544)
[»] scaffold0083 (1 HSPs)
scaffold0083 (82-210)||(26675-26803)
[»] scaffold0043 (1 HSPs)
scaffold0043 (82-210)||(11996-12124)
[»] scaffold2047 (1 HSPs)
scaffold2047 (45-239)||(49-242)
[»] scaffold0002 (1 HSPs)
scaffold0002 (127-210)||(117788-117871)
[»] scaffold1755 (1 HSPs)
scaffold1755 (6-168)||(874-1036)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36333243 - 36333004
Alignment:
Q  1 cttgcggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36333243 cttgcggattttcttccaccacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaaaaccaccacactg 36333144  T
Q  101 aacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttc 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  36333143 aacttcagttttatcaaatgaaactcgatttaacctcaagaattcatctaaaatattttaaagttgagagttgtaatcgatgtagatcacctctttcttc 36333044  T
Q  201 ccttcacaatatccactatgatgattttccccataaaaac 240  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  36333043 ccttcacaatatccattatgatgattttccccataaaaac 36333004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 34407280 - 34407146
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  |||||| |||||||||  |||||||||||||||| ||||| || ||||||| | |||||||||| ||||||||||||  ||| |    
T  34407280 ctttctcaacaagattaccacattgaacttcaaatttttcaaatgaaacttgatttgacatcaagaaattatctaaaataatttgaagttgagtattgta 34407181  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| ||||||||||||||||||||||||||    
T  34407180 atcgatgttgatcacctctttcttcccttcacaat 34407146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 2454127 - 2453995
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |||    
T  2454127 ttctcaacaagatcaccacactgaacatcaaacttatcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaat 2454028  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| |||||||||||||||| |||||||||    
T  2454027 cgatgttgatcacctctttcttctcttcacaat 2453995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 22036770 - 22036571
Alignment:
Q  8 attttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttca 107  Q
    |||||||||||| ||||   |||||||||| ||||  |||||||| | || |||||||   |||||  |||||  ||||||| |||||||||||||||||    
T  22036770 attttcttccaccacaa---catgacactcagtctccatctcaaccagctgcttctcacactcattcgctttccgaacaagatcaccacactgaacttca 22036674  T
Q  108 gttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcac 207  Q
      ||| ||||||| |||| |||||||  ||||||| |||||||||||||||||||||||||  ||| ||||||||| ||| | |||||||  ||||||||    
T  22036673 aatttctcaaatggaacttgatttaatatcaagaaatcatctaaaatattttgaagttgagtattgtaatcgatgttgataagctctttcagcccttcac 22036574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 30762246 - 30762114
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   || |||||||| ||| ||||| ||  |||||| |||||||||||||||||||||||||  ||  |||    
T  30762246 ttctcaacaagatcaccacactgaacatcaaacttctcaaatgacacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattataat 30762147  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| ||||||||||||||||||||||||||    
T  30762146 cgatgttgatcacctctttcttcccttcacaat 30762114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 19687005 - 19686873
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   || |||||||| ||| ||||| ||  |||||| |||||||||||||||||||||||||  ||  |||    
T  19687005 ttctcaacaagatcaccacactgaacatcaaacttctcaaatgacacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattataat 19686906  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| ||||||||||||||| ||||||||||    
T  19686905 cgatgttgatcacctctttctttccttcacaat 19686873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 28565229 - 28565361
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   || |||||||||||| | ||| ||  |||||| |||||||||||||||||||||||||  ||| |||    
T  28565229 ttctcaacaagatcaccacactgaacatcaaacttatcaaatgaaacttggtttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaat 28565328  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| |||||||||||||||| ||| |||||    
T  28565329 cgatgttgatcacctctttcttctctttacaat 28565361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 21334990 - 21335122
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   || ||||||||||||  |||| ||  |||||| |||||||||||||||||||||||||  ||| |||    
T  21334990 ttctcaacaagatcaccacactgaacatcaaacttatcaaatgaaacttcatttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaat 21335089  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    | |||| |||||||||||||||| || ||||||    
T  21335090 caatgttgatcacctctttcttctctacacaat 21335122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 26548911 - 26548779
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   || |||||||||| | | ||| ||  |||||| |||||||||||||||||||||||||  ||| |||    
T  26548911 ttctcaacaagatcaccacactgaacatcaaacttatcaaatgaaaattggtttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaat 26548812  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| |||||||||||||||| ||| |||||    
T  26548811 cgatgttgatcacctctttcttctctttacaat 26548779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 18017151 - 18016940
Alignment:
Q  28 catgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcg 127  Q
    |||||||||| || |  |||||||| |||| |||||||  ||||||| ||||| ||| |||| ||||||||| ||| |||  ||| ||||||||||||      
T  18017151 catgacactcagtttccatctcaaccaactgcttctcacattcatttgctttcccaataagatcaccacactaaacctcaaatttatcaaatgaaacttt 18017052  T
Q  128 atttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcacaatatccactatgatgattt 227  Q
    |||| | |||||||||||||||||||| |||| ||||| |||| |  ||| |||   ||||| | |||||| |||||| ||||||| ||| ||||||||     
T  18017051 atttgatctcaagaattcatctaaaatcttttaaagttcagagatttaattgatcatgatcatcactttctgcccttcccaatatctactctgatgattc 18016952  T
Q  228 tccccataaaaa 239  Q
     || ||||||||    
T  18016951 gccacataaaaa 18016940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 22939705 - 22939817
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  |||||||||||  |||   || |||||| ||||| ||| | ||  |||||| |||||||||||||||||||||||||  ||| |    
T  22939705 ctttctcaacaagattaccacactgaatatcaaacttctcaaataaaacttgatatgacaccaagaaatcatctaaaatattttgaagttgagtattgta 22939804  T
Q  176 atcgatgtagatc 188  Q
    |||||||| ||||    
T  22939805 atcgatgttgatc 22939817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 17865787 - 17865996
Alignment:
Q  1 cttgcggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactg 100  Q
    |||| ||||| || ||||| |||||||| | |||||| ||||  |||||||| ||||| | || |   |||| | ||||||||||||||  |||||| ||    
T  17865787 cttgtggattgtcgtccaccacaatagccttacactcagtctccatctcaaccaacttttgctgagactcatatgctttctcaacaagattaccacattg 17865886  T
Q  101 aacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttc 200  Q
    |||||||  |||||||||||||||| ||||| || ||||||| | |||||||||| ||||||||||||  ||||||||||||| ||||||||||||||||    
T  17865887 aacttcaaatttttcaaatgaaacttgatttgacatcaagaaattatctaaaataatttgaagttgagtattgcaatcgatgttgatcacctctttcttc 17865986  T
Q  201 ccttcacaat 210  Q
    ||||||||||    
T  17865987 ccttcacaat 17865996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 22231915 - 22232047
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   ||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||  ||| |||    
T  22231915 ttctcaacaagatcaccacactgaacatcaaacttttcaaatgaaacttgatttgacaccaagaattcatctaaaatattttgaagttgagtattgtaat 22232014  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| ||| |||||||||||| |||||||||    
T  22232015 cgatgttgataacctctttcttctcttcacaat 22232047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 22254824 - 22254692
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   ||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||  ||| |||    
T  22254824 ttctcaacaagatcaccacactgaacatcaaacttttcaaatgaaacttgatttgacaccaagaattcatctaaaatattttgaagttgagtattgtaat 22254725  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| ||| |||||||||||| |||||||||    
T  22254724 cgatgttgataacctctttcttctcttcacaat 22254692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 45289691 - 45289895
Alignment:
Q  6 ggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaactt 105  Q
    |||||||||||||| ||||   | |||||||| ||||  |||| ||| | |||||||| |   |||| | |||||||||||||| ||||||||||||| |    
T  45289691 ggattttcttccacaacaacctcgtgacactcagtctccatctgaaccagcttcttctgagactcatgtgctttctcaacaagatcaccacactgaacat 45289790  T
Q  106 cagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttc 205  Q
    ||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||| ||||    
T  45289791 caaacttctcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaatcgatgttgatcacctctttcttctcttc 45289890  T
Q  206 acaat 210  Q
    |||||    
T  45289891 acaat 45289895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 1636137 - 1636336
Alignment:
Q  8 attttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttca 107  Q
    |||||||||||| ||||   |||||||||| ||||  |||||||| | || |||||||   |||||  |||||  ||||||| |||||||||||||||||    
T  1636137 attttcttccaccacaa---catgacactcagtctccatctcaaccagctgcttctcacactcattcgctttccgaacaagatcaccacactgaacttca 1636233  T
Q  108 gttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcac 207  Q
      ||| ||||||| |||| |||||||  ||||||| |||||||||||||||||||||||||  ||| ||||||||| ||| | |||||||  ||||||||    
T  1636234 aatttctcaaatggaacttgatttaatatcaagaaatcatctaaaatattttgaagttgagtattgtaatcgatgttgataagctctttcagcccttcac 1636333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 20434797 - 20434625
Alignment:
Q  8 attttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttca 107  Q
    |||||||||||| ||||   |||||||||| ||||  |||||||| | || |||||||  ||||||| ||||   ||||||| |||||||||||||||||    
T  20434797 attttcttccaccacaa---catgacactcagtctccatctcaaccagctgcttctcacattcatttgcttttcgaacaagatcaccacactgaacttca 20434701  T
Q  108 gttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgt 183  Q
      ||| ||||||| |||| |||||||  ||||||| |||||||||||||||||||||||||  ||| |||||||||    
T  20434700 aatttctcaaatgtaacttgatttaatatcaagaaatcatctaaaatattttgaagttgagtattgtaatcgatgt 20434625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 26461354 - 26461150
Alignment:
Q  6 ggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaactt 105  Q
    |||||||||||||| ||||   | |||||||| ||||  |||| ||| |||||| ||| |   |||| | ||||||||||||||  |||||| ||||| |    
T  26461354 ggattttcttccacaacaacctcgtgacactcagtctccatctgaaccaacttcatctgagactcatgtgctttctcaacaagattaccacattgaacat 26461255  T
Q  106 cagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttc 205  Q
    ||   || |||||| ||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||| ||||    
T  26461254 caaacttctcaaataaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaatcgatgttgatcacctctttcttctcttc 26461155  T
Q  206 acaat 210  Q
    |||||    
T  26461154 acaat 26461150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 4543631 - 4543497
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  || ||||||||| |||   || |||||| ||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  4543631 ctttctcaacaagattacaacactgaacatcaaacttctcaaataaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgta 4543532  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| |||||||||||||||| |||||||||    
T  4543531 atcgatgttgatcacctctttcttctcttcacaat 4543497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 37414704 - 37414838
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  || ||||||||| |||   || |||||| ||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  37414704 ctttctcaacaagattactacactgaacatcaaacttctcaaataaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgta 37414803  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| |||||||||||||||| |||||||||    
T  37414804 atcgatgttgatcacctctttcttctcttcacaat 37414838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 18973194 - 18973290
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagtt 172  Q
    ||||||||||||||  |||||| |||||||||  ||| |||||||||||| ||||| || |||||||  ||||||||||||||||||||||||||||    
T  18973194 ctttctcaacaagattaccacattgaacttcaaatttctcaaatgaaacttgatttgacatcaagaaaccatctaaaatattttgaagttgagagtt 18973290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 13907090 - 13907185
Alignment:
Q  77 tttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagtt 172  Q
    ||||||||||||| |||||||| |||| |||  ||| ||| || ||||||||||  || | || ||||||||||||||| ||||||||||| ||||    
T  13907090 tttctcaacaagatcaccacacggaacgtcaaatttatcatataaaactcgattggacattaaaaattcatctaaaatagtttgaagttgaaagtt 13907185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 649980 - 650114
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  |||||| |||||||||  |||||||||||||||| ||||| || ||||||| | |||||||||| ||||||||||||  ||| |    
T  649980 ctttctcaacaagattaccacattgaacttcaaatttttcaaatgaaacttgatttgacatcaagaaattatctaaaataatttgaagttgagtattgta 650079  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| ||||||||||||||||||||||||||    
T  650080 atcgatgttgatcacctctttcttcccttcacaat 650114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 646628 - 646837
Alignment:
Q  1 cttgcggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactg 100  Q
    |||| ||||| || ||||| |||||||| | |||||| ||||  |||||||| ||||| | || |   |||| | ||||||||||||||  |||||| |     
T  646628 cttgtggattgtcgtccaccacaatagccttacactcagtctccatctcaaccaacttttgctgagactcatatgctttctcaacaagattaccacatta 646727  T
Q  101 aacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttc 200  Q
    |||||||  |||||||||||||||| ||||| || ||||||| | |||||||||| ||||||||||||  ||| ||||||||| ||||||||||||||||    
T  646728 aacttcaaatttttcaaatgaaacttgatttgacatcaagaaattatctaaaataatttgaagttgagtattgtaatcgatgttgatcacctctttcttc 646827  T
Q  201 ccttcacaat 210  Q
    ||||||||||    
T  646828 ccttcacaat 646837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 5671405 - 5671271
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  |||||| |||||||||||||||| ||||||||  ||| |    
T  5671405 ctttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaaatcatctaaaatatttttaagttgagtattgta 5671306  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| |||||||||||||||| |||||||||    
T  5671305 atcgatgttgatcacctctttcttctcttcacaat 5671271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 56196363 - 56196229
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| || |||||||||| |||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  56196363 ctttctcaacaagatcatcacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaagtcatctaaaatattttgaagttgagtattgta 56196264  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| |||||||||||||||| |||||||||    
T  56196263 atcgatgtcgatcacctctttcttctcttcacaat 56196229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 210
Target Start/End: Original strand, 15404387 - 15404515
Alignment:
Q  82 caacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgat 181  Q
    |||||||| ||||||||||||| |||   ||||||||||||||| ||||| ||  ||||||  ||||||||||||||||||||||||  ||| |||||||    
T  15404387 caacaagatcaccacactgaacatcaaacttttcaaatgaaacttgatttgacaccaagaaaacatctaaaatattttgaagttgagtattgtaatcgat 15404486  T
Q  182 gtagatcacctctttcttcccttcacaat 210  Q
    || |||||||||||||||| |||||||||    
T  15404487 gttgatcacctctttcttctcttcacaat 15404515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 52005803 - 52005934
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  ||||||  ||||||||||||||||||||||||  ||| |||    
T  52005803 ttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaaa-catctaaaatattttgaagttgagtattgtaat 52005901  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| ||||||||||||||||||||||||||    
T  52005902 cgatgttgatcacctctttcttcccttcacaat 52005934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 22883687 - 22883821
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| |||||||||||||||||  ||| |||||||||| | ||||||| |||||||| |||||||||||||||||||| ||||  ||  |    
T  22883687 ctttctcaacaagatcaccacactgaacttcaaatttctcaaatgaaatttgatttaatctcaagaaatcatctaaaatattttgaagctgagtattata 22883786  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| ||| | |||||||  |||||||||||    
T  22883787 atcgatgttgataaactctttcagcccttcacaat 22883821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 22935351 - 22935485
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| |||||||||||||||||  ||| |||||||||| | ||||||| |||||||| |||||||||||||||||||| ||||  ||  |    
T  22935351 ctttctcaacaagatcaccacactgaacttcaaatttctcaaatgaaatttgatttaatctcaagaaatcatctaaaatattttgaagctgagtattata 22935450  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| ||| | |||||||  |||||||||||    
T  22935451 atcgatgttgataaactctttcagcccttcacaat 22935485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 49639037 - 49639241
Alignment:
Q  6 ggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaactt 105  Q
    |||||||||||||| ||||   | |||||||| ||||  |||| ||| |||||| ||| |   |||| | ||||||||||||||  |||||| ||||| |    
T  49639037 ggattttcttccacaacaacctcgtgacactcagtctccatctgaaccaacttcatctgagactcatgtgctttctcaacaagattaccacattgaacat 49639136  T
Q  106 cagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttc 205  Q
    ||   || |||||| ||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||| ||||    
T  49639137 caaacttctcaaataaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaatcgatgttgatcacctctttcttctcttc 49639236  T
Q  206 acaat 210  Q
    |||||    
T  49639237 acaat 49639241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 7394147 - 7394281
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  ||||||| |||| |||   || |||||||||||| ||||| || |||| || |||||||||||||||||||||||||||||  |    
T  7394147 ctttctcaacaagattaccacacagaacatcaaacttctcaaatgaaacttgatttgacatcaataaatcatctaaaatattttgaagttgagagttata 7394246  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    ||| |||| || |||||||||||||||||| ||||    
T  7394247 atctatgttgaccacctctttcttcccttcgcaat 7394281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 19825145 - 19825020
Alignment:
Q  85 caagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgta 184  Q
    ||||| ||||||||||||| |||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| ||| |||||     
T  19825145 caagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaattgatgtt 19825046  T
Q  185 gatcacctctttcttcccttcacaat 210  Q
    |||||||||||||||| |||||||||    
T  19825045 gatcacctctttcttctcttcacaat 19825020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 26062197 - 26062314
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||| | ||||||| ||||| |||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  26062197 ctttctcaacaaaatcaccacagtgaacatcaaacttctcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgta 26062296  T
Q  176 atcgatgtagatcacctc 193  Q
    |||||||| |||||||||    
T  26062297 atcgatgttgatcacctc 26062314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 22092521 - 22092592
Alignment:
Q  80 ctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaa 151  Q
    |||||||||| ||||||||||||| |||  ||| |||| ||||||||||||  |||||||||||||||||||    
T  22092521 ctcaacaagatcaccacactgaacctcaaatttatcaagtgaaactcgattggacctcaagaattcatctaa 22092592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 12574779 - 12574988
Alignment:
Q  1 cttgcggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactg 100  Q
    |||| ||||| |||||||| ||| |||| |||||||||||||  |||||||| || ||||||| |   |||| | |||||||||||||| ||||||||||    
T  12574779 cttgtggattgtcttccaccacagtagcctgacactcggtctccatctcaaccaaattcttctgagactcatatgctttctcaacaagatcaccacactg 12574878  T
Q  101 aacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttc 200  Q
    |||||||  ||| | |||||||||| ||||| || |||| || |||||||||||||||||||||||||  ||| ||||||||| ||   ||||||| |||    
T  12574879 aacttcaaatttcttaaatgaaacttgatttgacatcaaaaaatcatctaaaatattttgaagttgagtattgtaatcgatgttgagtgcctctttattc 12574978  T
Q  201 ccttcacaat 210  Q
    |||| |||||    
T  12574979 cctttacaat 12574988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 18825187 - 18825317
Alignment:
Q  80 ctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcg 179  Q
    |||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||  ||| |||||    
T  18825187 ctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaattcatctaaaatattttgaagttgagtattgtaatcg 18825286  T
Q  180 atgtagatcacctctttcttcccttcacaat 210  Q
    |||| |||||||||||||||| |||||||||    
T  18825287 atgttgatcacctctttcttctcttcacaat 18825317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 22173234 - 22173368
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| ||||||||||||| |||   || |||| ||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  22173234 ctttctcaacaagatcaccacactgaacatcaaacttctcaactgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgta 22173333  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| |||||||||||||||| |||||||||    
T  22173334 atcgatgttgatcacctctttcttctcttcacaat 22173368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 25594180 - 25594314
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  25594180 ctttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgta 25594279  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    ||| |||| |||||||||||||||| |||||||||    
T  25594280 atcaatgttgatcacctctttcttctcttcacaat 25594314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 33879882 - 33880016
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| ||||||||||||| ||    || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  33879882 ctttctcaacaagatcaccacactgaacatcgaacttctcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgta 33879981  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| |||||||||||||||| |||||||||    
T  33879982 atcgatgttgatcacctctttcttctcttcacaat 33880016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 23644661 - 23644527
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  23644661 ctttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgta 23644562  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||  ||||||||||||||| | ||||||||    
T  23644561 atcgatggtgatcacctctttcttgctttcacaat 23644527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 39659226 - 39659360
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| |||| |||||||| |||   || |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||   ||| |    
T  39659226 ctttctcaacaagatcaccgcactgaacatcaaacttctcaaatgaaacttgatttaacatcaagaaatcatctaaaatattttgaagttgactattgta 39659325  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    ||| |||| ||||| ||||||||||| ||||||||    
T  39659326 atcaatgttgatcaactctttcttccattcacaat 39659360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 23946428 - 23946556
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||   || || |||||||||||||||||||||||||  ||| |||    
T  23946428 ttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacactaaaaaatcatctaaaatattttgaagttgagtattgtaat 23946527  T
Q  178 cgatgtagatcacctctttcttcccttca 206  Q
    |||||| ||||||||||||||||||||||    
T  23946528 cgatgttgatcacctctttcttcccttca 23946556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 31982185 - 31982051
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  ||| |||| ||| |||   || |||||||||||| ||||| || |||| || |||||||||||||||||||||||||||||  |    
T  31982185 ctttctcaacaagattaccccactaaacatcaaacttctcaaatgaaacttgatttgacatcaaaaaatcatctaaaatattttgaagttgagagttata 31982086  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    ||| |||| || ||||| |||||||||||||||||    
T  31982085 atctatgttgaccacctttttcttcccttcacaat 31982051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 168
Target Start/End: Complemental strand, 12583917 - 12583755
Alignment:
Q  6 ggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaactt 105  Q
    |||||||||||||| |||||| | || || |  ||||  |||| ||| |||||||||| |   |||| | |||||||||||||| ||| ||||||||| |    
T  12583917 ggattttcttccaccacaatatcttggcaattagtctccatctgaaccaacttcttctgagactcatatgctttctcaacaagatcactacactgaacct 12583818  T
Q  106 cagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgag 168  Q
    ||   ||||||||||||||| ||||| || ||||||| ||||||| |||||||| || |||||    
T  12583817 caaacttttcaaatgaaacttgatttgacatcaagaaatcatctagaatatttttaaattgag 12583755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 14793204 - 14793000
Alignment:
Q  6 ggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaactt 105  Q
    ||||| || ||||| |||||||| | |||||| ||||  |||||||| ||||| | || |   |||| | ||||||||||||||  |||||| |||||||    
T  14793204 ggattgtcgtccaccacaatagccttacactcagtctccatctcaaccaacttttcctgagactcatatgctttctcaacaagattaccacattgaactt 14793105  T
Q  106 cagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttc 205  Q
    ||  |||||||| ||||||| ||||| || ||||||| | |||||||||| ||||||||||||  ||| ||||||||| |||||||||||||||||||||    
T  14793104 caaatttttcaattgaaacttgatttgacatcaagaaattatctaaaataatttgaagttgagtattgtaatcgatgttgatcacctctttcttcccttc 14793005  T
Q  206 acaat 210  Q
    |||||    
T  14793004 acaat 14793000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 32110526 - 32110393
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  |||||||| ||| |||   || |||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||||  |    
T  32110526 ctttctcaacaagattaccacactaaacatcaaacttctcaaatgaaacttgatttgacatcaagaaatcatctaaaatattttgaagttgagagttata 32110427  T
Q  176 atcgatgtagatcacctctttcttcccttcacaa 209  Q
    ||| |||| || ||||||||||||||||||||||    
T  32110426 atctatgttgaccacctctttcttcccttcacaa 32110393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 14967052 - 14966920
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||| ||||| ||||||||||||| |||   || |||||||| ||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |||    
T  14967052 ttctcatcaagatcaccacactgaacatcaaacttctcaaatgacacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaat 14966953  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| ||||||||||||||||||||||||||    
T  14966952 cgatgttgatcacctctttcttcccttcacaat 14966920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 15535854 - 15535672
Alignment:
Q  1 cttgcggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactg 100  Q
    |||| ||||| || ||||| ||| |||| |||||||| ||||  |||||||| ||||| | || |   |||| | ||||||||||||||  |||||||||    
T  15535854 cttgtggattatcgtccaccacagtagcctgacactcagtctccatctcaaccaacttttgctgagactcatatgctttctcaacaagattaccacactg 15535755  T
Q  101 aacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgt 183  Q
    |||||||  |||||||||||||||| ||||| || | ||||| || ||||||||||||||||||||||||||| |||| ||||    
T  15535754 aacttcaaatttttcaaatgaaacttgatttgacataaagaaatcgtctaaaatattttgaagttgagagttgtaatctatgt 15535672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 23381456 - 23381590
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||  ||| ||||||||||||| |||   || |||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||  ||| |    
T  23381456 ctttctcaattagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaattcatctaaaatattttgaagttgagtattgta 23381555  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    ||| |||| |||||||||||||||| |||||||||    
T  23381556 atctatgttgatcacctctttcttctcttcacaat 23381590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 12982946 - 12983080
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  |||||| ||||| |||   || |||||||||||| ||||| |  ||||||| |||||||||||||||||||||||| ||||  |    
T  12982946 ctttctcaacaagattaccacattgaacatcaaacttctcaaatgaaacttgatttgaaatcaagaaatcatctaaaatattttgaagttgacagttata 12983045  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    ||| |||| || |||||||||||||||||||||||    
T  12983046 atctatgttgaccacctctttcttcccttcacaat 12983080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 13020587 - 13020682
Alignment:
Q  114 tcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||||||| ||||| || ||||||| |||||||||||||||||||||||  | ||| ||| ||||| |||||||| |||||||||||||||||    
T  13020587 tcaaatgaaacttgatttgacatcaagaaatcatctaaaatattttgaagttgtta-ttgtaattgatgttgatcacctatttcttcccttcacaat 13020682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 28893796 - 28893892
Alignment:
Q  114 tcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||||||| ||||| ||  |||||| ||||| |||||||||||||||||||  ||| ||||||||| |||||||| ||||||| |||||||||    
T  28893796 tcaaatgaaacttgatttcacaccaagaaatcatcaaaaatattttgaagttgagtattgtaatcgatgttgatcacctatttcttctcttcacaat 28893892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 168
Target Start/End: Original strand, 23841991 - 23842153
Alignment:
Q  6 ggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaactt 105  Q
    |||||||||||||| |||||  | |||||||| ||||  |||| ||| |||||| ||| |   |||| | ||||||||| |||| ||||||||||||  |    
T  23841991 ggattttcttccaccacaatctcgtgacactcagtctccatctgaaccaacttcctctgagactcatgtgctttctcaataagatcaccacactgaagat 23842090  T
Q  106 cagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgag 168  Q
    ||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||    
T  23842091 caaacttctcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgag 23842153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 18140547 - 18140639
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgag 168  Q
    |||||||| ||| | ||||||||||||  |||   || |||||||||||| ||||| ||  ||| || |||||||||||||||||||||||||    
T  18140547 ctttctcatcaaaatcaccacactgaagatcaaacttctcaaatgaaacttgatttgacaccaaaaaatcatctaaaatattttgaagttgag 18140639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 22958545 - 22958453
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgag 168  Q
    |||||||||||||| ||||||||||||  |||   || |||||| ||||| ||||| ||  |||||| ||||||||| | |||||||||||||    
T  22958545 ctttctcaacaagatcaccacactgaatatcaaacttctcaaattaaacttgatttgacaccaagaaatcatctaaatttttttgaagttgag 22958453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 23829847 - 23829939
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgag 168  Q
    |||||||||||||| ||||||||||||  |||   || |||||| ||||| ||||| ||  |||||| ||||||||| | |||||||||||||    
T  23829847 ctttctcaacaagatcaccacactgaatatcaaacttctcaaattaaacttgatttgacaccaagaaatcatctaaatttttttgaagttgag 23829939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 26821491 - 26821666
Alignment:
Q  8 attttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttca 107  Q
    ||||||| |||| |||||| ||||||||||  |||| |||||||| |||||||| |||  ||||||| |||||| ||||||| ||||||| ||||||| |    
T  26821491 attttctcccaccacaataacatgacactcaatcttcatctcaaccaacttcttttcacattcatttgctttcttaacaagatcaccacattgaacttta 26821590  T
Q  108 gttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgt 183  Q
      ||| ||||||||| || ||||| ||||||| |||| |||||||||| ||||||||||||||||| |||| ||||    
T  26821591 aatttatcaaatgaacctagatttgacctcaaaaattaatctaaaatagtttgaagttgagagttgtaatctatgt 26821666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 2776407 - 2776275
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||  ||| |||    
T  2776407 ttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaattcatctaaaatattttgaagttgagtattgtaat 2776308  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    | |||| |||||||||||||||| |||||||||    
T  2776307 ctatgtggatcacctctttcttctcttcacaat 2776275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 28328274 - 28328142
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||  | | |||    
T  28328274 ttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaattcatctaaaatattttgaagttgagtatggtaat 28328175  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| |||||||||||||||| |||||||||    
T  28328174 cgatgttgatcacctctttcttctcttcacaat 28328142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 13556032 - 13555901
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||  ||| |    
T  13556032 ctttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaattcatctaaaatattttgaagttgagtattgta 13555933  T
Q  176 atcgatgtagatcacctctttcttcccttcac 207  Q
    ||| |||| |||||||||||||||| ||||||    
T  13555932 atctatgttgatcacctctttcttctcttcac 13555901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 10882397 - 10882263
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| ||||||| ||| | |||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  10882397 ctttctcaacaagatcaccacattgaccatcaaacttctcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgta 10882298  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| |||||||||||||||| |||||||||    
T  10882297 atcgatgttgatcacctctttcttctcttcacaat 10882263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 24126413 - 24126291
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||  ||| |||    
T  24126413 ttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaattcatctaaaatattttgaagttgagtattgtaat 24126314  T
Q  178 cgatgtagatcacctctttcttc 200  Q
    | |||| ||||||||||||||||    
T  24126313 ctatgttgatcacctctttcttc 24126291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 10960731 - 10960607
Alignment:
Q  82 caacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgat 181  Q
    |||||||| |||||||||||||||||   || |||| ||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |||||||    
T  10960731 caacaagatcaccacactgaacttcaaacttctcaactgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaatcgat 10960632  T
Q  182 gtagatcacctctttcttcccttca 206  Q
    || |||||||||||||||| |||||    
T  10960631 gttgatcacctctttcttctcttca 10960607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 10964238 - 10964114
Alignment:
Q  82 caacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgat 181  Q
    |||||||| |||||||||||||||||   || |||| ||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |||||||    
T  10964238 caacaagatcaccacactgaacttcaaacttctcaactgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaatcgat 10964139  T
Q  182 gtagatcacctctttcttcccttca 206  Q
    || |||||||||||||||| |||||    
T  10964138 gttgatcacctctttcttctcttca 10964114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 47052388 - 47052254
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  |||||| |||| ||||||||||||||||||||  ||  |    
T  47052388 ctttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaaatcatttaaaatattttgaagttgagtattcta 47052289  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| ||||| ||||||||||||| ||||||    
T  47052288 atcgatgttgatcatctctttcttccctgcacaat 47052254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 16183959 - 16184091
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    ||||||||||||  |||||||||||| |||   || |||||| ||||| ||||| || ||||||| |||| ||||||||||||||||||||  ||| |||    
T  16183959 ttctcaacaagattaccacactgaacatcaaacttctcaaataaaacttgatttgacatcaagaaatcatttaaaatattttgaagttgagtattgtaat 16184058  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| |||||||||||||||| ||| |||||    
T  16184059 cgatgttgatcacctctttcttctctttacaat 16184091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 9155639 - 9155512
Alignment:
Q  83 aacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatg 182  Q
    ||||||| |||||||||||||  ||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| ||||||||    
T  9155639 aacaagatcaccacactgaacaacaaacttctcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaatcgatg 9155540  T
Q  183 tagatcacctctttcttcccttcacaat 210  Q
    | ||| |||||||||||| |||||||||    
T  9155539 ttgattacctctttcttctcttcacaat 9155512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 18644056 - 18644175
Alignment:
Q  91 caccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcac 190  Q
    ||||||||||||| |||   || |||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||  ||| |||| |||| ||||||    
T  18644056 caccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaattcatctaaaatattttgaagttgagtattgtaatctatgttgatcac 18644155  T
Q  191 ctctttcttcccttcacaat 210  Q
    |||||||||| ||| |||||    
T  18644156 ctctttcttctctttacaat 18644175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 55034270 - 55034399
Alignment:
Q  81 tcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcga 180  Q
    ||||||||| ||||||||||||| ||    || |||||||||| | ||||| ||   ||||| |||||||||||||||||||||||||  ||| ||||||    
T  55034270 tcaacaagatcaccacactgaacatcgaacttctcaaatgaaatttgatttgacactaagaaatcatctaaaatattttgaagttgagtattgtaatcga 55034369  T
Q  181 tgtagatcacctctttcttcccttcacaat 210  Q
    ||| |||||||||||||||| |||||||||    
T  55034370 tgttgatcacctctttcttctcttcacaat 55034399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 159
Target Start/End: Original strand, 19303900 - 19304053
Alignment:
Q  6 ggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaactt 105  Q
    |||||||||||||| |||||||||||||| |  ||||  |||| ||| |||||||||  |   || |   |||||||||||||| ||| ||| ||||| |    
T  19303900 ggattttcttccaccacaatagcatgacaattagtctccatctgaaccaacttcttcggagactcgtacgctttctcaacaagatcactacattgaacat 19303999  T
Q  106 cagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatatttt 159  Q
    ||   ||||||||||||||| ||||| || ||||||| ||||||| ||||||||    
T  19304000 caaacttttcaaatgaaacttgatttgacatcaagaaatcatctagaatatttt 19304053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 11603380 - 11603238
Alignment:
Q  48 tcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcat 147  Q
    ||||| ||||||||||||   |||| |||||||||||| ||| ||| ||| |||| ||    | | |||||||||||| || |   ||||||||||||||    
T  11603380 tcaaccaacttcttctcacaatcatctactttctcaactagatcactacattgaagtttcaatctatcaaatgaaacttgactagtcctcaagaattcat 11603281  T
Q  148 ctaaaatattttgaagttgagagttgcaatcgatgtagatcac 190  Q
    ||||| ||||||| |||| ||||||| |||| |||| ||||||    
T  11603280 ctaaagtattttggagttaagagttgtaatcaatgtcgatcac 11603238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 13494044 - 13493865
Alignment:
Q  31 gacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatt 130  Q
    ||||||| ||||  |||||||||||||| | || |   |||| | |||||||||||||| ||||||||||||| |||   || |||||||||||| ||||    
T  13494044 gacactcagtctccatctcaacaaacttttgctgagactcatatgctttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatt 13493945  T
Q  131 taacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcacaat 210  Q
    | || ||||||| | |||||||||| ||||||||||||  ||| ||||||||| ||||||||||||||||||||||||||    
T  13493944 tgacatcaagaaattatctaaaataatttgaagttgagtattgtaatcgatgttgatcacctctttcttcccttcacaat 13493865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 22456008 - 22456142
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  |||||||||||| |||   || |||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||||  |    
T  22456008 ctttctcaacaagattaccacactgaacatcaaacttctcaaatgaaacttgatttgacatcaagaaatcatctaaaatattttgaagttgagagttata 22456107  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    ||| |||| || |||| ||||||||||||||||||    
T  22456108 atctatgttgaccaccactttcttcccttcacaat 22456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 28141298 - 28141497
Alignment:
Q  8 attttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttca 107  Q
    |||||||||||| ||||   |||||||||| ||||  |||||||| | || |||||||   |||||  ||| |  ||||||| |||||||||||||||||    
T  28141298 attttcttccaccacaa---catgacactcagtctccatctcaaccagctgcttctcacactcattcgcttcccgaacaagatcaccacactgaacttca 28141394  T
Q  108 gttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcac 207  Q
      ||| ||||||| |||| |||||||  ||||||| |||||||||||||||||||||||||  ||| ||||||||| ||| | |||||||  ||||||||    
T  28141395 aatttctcaaatggaacttgatttaatatcaagaaatcatctaaaatattttgaagttgagtattgtaatcgatgttgataagctctttcagcccttcac 28141494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 21913681 - 21913880
Alignment:
Q  8 attttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttca 107  Q
    |||||||||||| ||||   |||||||| | ||||  |||||||| | || |||||||  ||||||  ||||| |||||||| |||||||||||||||||    
T  21913681 attttcttccaccacaa---catgacacccagtctccatctcaaccagctgcttctcacattcattcgctttcccaacaagatcaccacactgaacttca 21913777  T
Q  108 gttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcac 207  Q
      ||| |||||||||||| |||||||  ||||||  ||||| |||||||||||||| ||||  ||| ||| ||||| ||| | |||||||  ||||||||    
T  21913778 aatttctcaaatgaaacttgatttaatatcaagatatcatccaaaatattttgaagctgagtattgtaattgatgttgataagctctttcagcccttcac 21913877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 49717216 - 49717082
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| |||||||| |||| |||   || ||||||| |||| ||||| ||  ||| || |||||||||||| ||||||||||||  ||| |    
T  49717216 ctttctcaacaagatcaccacacagaacatcaaacttctcaaatgcaacttgatttgacaccaataaatcatctaaaatagtttgaagttgagtattgta 49717117  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| ||| ||||||||||| ||||||||||    
T  49717116 atcgatgttgattacctctttctttccttcacaat 49717082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 20884 - 20750
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| ||||||||||||| |||  ||| |||||||||||| ||||| ||  |||||| |||| ||||||||||||||||||||  ||| |    
T  20884 ctttctcaacaagatcaccacactgaacatcaaatttctcaaatgaaacttgatttgacaccaagaaatcatttaaaatattttgaagttgagtattgta 20785  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| |||||||||||||||| |||||||||    
T  20784 atcgatgttgatcacctctttcttctcttcacaat 20750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 36703 - 36521
Alignment:
Q  28 catgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcg 127  Q
    |||||||||| ||||  |||||||| |||| |||||||  ||||||  ||||| |||||||| |||||||||||||||||  ||| |||||||||||| |    
T  36703 catgacactcagtctccatctcaaccaactgcttctcacattcattcgctttcccaacaagatcaccacactgaacttcaaatttctcaaatgaaacttg 36604  T
Q  128 atttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcacaat 210  Q
    ||||||  ||||||| |||||||||||||||||||| ||||  ||| ||||||||| ||| | |||||||  || ||||||||    
T  36603 atttaatatcaagaaatcatctaaaatattttgaagctgagtattgtaatcgatgttgataagctctttcagcctttcacaat 36521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 293835 - 293707
Alignment:
Q  82 caacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgat 181  Q
    |||||||| ||||||||||||| |||   || |||||||||||| |||||  | ||||||| |||||||||||||||||||||||||  ||| |||||||    
T  293835 caacaagatcaccacactgaacgtcaaacttctcaaatgaaacttgatttgccatcaagaaatcatctaaaatattttgaagttgagtattgtaatcgat 293736  T
Q  182 gtagatcacctctttcttcccttcacaat 210  Q
    || ||||||||||||||||||||||||||    
T  293735 gttgatcacctctttcttcccttcacaat 293707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 11670 - 11804
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  11670 ctttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgta 11769  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    ||| || | ||||||||||||||||||||||||||    
T  11770 atccatattgatcacctctttcttcccttcacaat 11804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 3281 - 3149
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |||    
T  3281 ttctcaacaagatcaccacactgaacatcaaacttatcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaat 3182  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| |||||||||||| ||| |||||||||    
T  3181 cgatgttgatcacctcttttttctcttcacaat 3149  T

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Target: scaffold0134 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 7840 - 7708
Alignment:
Q  78 ttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaat 177  Q
    |||| ||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  |||| | |||||||||||||||||||||||||  ||| |||    
T  7840 ttcttaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagcaatcatctaaaatattttgaagttgagtattgtaat 7741  T
Q  178 cgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||| ||||||||||||||||||||||||||    
T  7740 cgatgttgatcacctctttcttcccttcacaat 7708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 35077825 - 35077626
Alignment:
Q  8 attttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttca 107  Q
    |||||||||||| ||||   |||||||||| ||||  |||||||| | || |||||||   |||||  |||||| ||||||| |||||||||||| ||||    
T  35077825 attttcttccaccacaa---catgacactcagtctccatctcaaccagctgcttctcacactcattcgctttctgaacaagatcaccacactgaatttca 35077729  T
Q  108 gttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcac 207  Q
      ||| ||||||| |||| |||||||  ||||||| |||||||||||||||||||||||||  ||| ||||||||| ||| | |||||||  ||||||||    
T  35077728 aatttctcaaatggaacttgatttaatatcaagaaatcatctaaaatattttgaagttgagtattgtaatcgatgttgataagctctttcagcccttcac 35077629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 25958997 - 25959131
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  ||| || |||||||||||||||||||||||||  ||| |    
T  25958997 ctttctcaacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaaaaaatcatctaaaatattttgaagttgagtattgta 25959096  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    || ||||| |||||||||||||||| |||||||||    
T  25959097 attgatgttgatcacctctttcttctcttcacaat 25959131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 24235958 - 24235778
Alignment:
Q  30 tgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgat 129  Q
    |||||||| ||||  |||| ||| |||||||||| |   |||| | ||||||||||||||  || ||||||||| |||   || |||||| ||||| |||    
T  24235958 tgacactcagtctccatctgaaccaacttcttctgagactcatgtgctttctcaacaagattactacactgaacatcaaacttctcaaataaaacttgat 24235859  T
Q  130 ttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcacaat 210  Q
    || ||  |||||| |||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||| |||||||||    
T  24235858 ttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaatcgatgttgatcacctctttcttctcttcacaat 24235778  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 45454673 - 45454545
Alignment:
Q  82 caacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgat 181  Q
    |||||||| ||||||||||||| |||   ||||||||| ||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |||||||    
T  45454673 caacaagaacaccacactgaacatcaaacttttcaaataaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgtaatcgat 45454574  T
Q  182 gtagatcacctctttcttcccttcacaat 210  Q
    || ||||||||||||||||  ||||||||    
T  45454573 gttgatcacctctttcttcttttcacaat 45454545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 9187944 - 9188077
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    |||||||||||||| ||||| | ||||| |||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  9187944 ctttctcaacaagatcacca-attgaacatcaaacttctcaaatgaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgta 9188042  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| |||||||||||||||| |||||||||    
T  9188043 atcgatgttgatcacctctttcttctcttcacaat 9188077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 25871590 - 25871456
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  |||||||||||| |||   || |||||| ||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  25871590 ctttctcaacaagattaccacactgaacatcaaacttctcaaataaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgta 25871491  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| ||||| |||||||||| |||||||||    
T  25871490 atcgatgttgatcatctctttcttctcttcacaat 25871456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 1505935 - 1506069
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  |||||||||||| |||   || |||||| ||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |    
T  1505935 ctttctcaacaagattaccacactgaacatcaaacttctcaaataaaacttgatttgacaccaagaaatcatctaaaatattttgaagttgagtattgta 1506034  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    | |||||| ||||| |||||||||| |||||||||    
T  1506035 accgatgttgatcatctctttcttctcttcacaat 1506069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 13614161 - 13613981
Alignment:
Q  1 cttgcggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactg 100  Q
    |||| |||||||||||||| ||| || || ||||||   |||  |||||||| |||||| |||||   |||||| | |||||||| | |  |||||| ||    
T  13614161 cttgtggattttcttccaccacagtaacaagacactttatctccatctcaactaacttcctctcagagtcatttgccttctcaaccatattaccacattg 13614062  T
Q  101 aacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgat 181  Q
    |||||    ||| |||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||| |||||||    
T  13614061 aacttttaatttatcaaatgaaactcgatttgatcttaagaattcatcttaaatattttgaagttgagagttgtaatcgat 13613981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 16790077 - 16790173
Alignment:
Q  114 tcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||||||| ||||| ||  |||||| |||||||||||||||| ||||||||  ||| ||||||||| ||||||||| |||||| |||||||||    
T  16790077 tcaaatgaaacttgatttgacaccaagaaatcatctaaaatatttttaagttgagtattgtaatcgatgttgatcacctccttcttctcttcacaat 16790173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 224544 - 224410
Alignment:
Q  76 ctttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgca 175  Q
    ||||||||||||||  ||| |||| ||| |||   || |||||||||||| ||||| || |||| || |||||||||||||||||||||||||  ||| |    
T  224544 ctttctcaacaagattaccccactaaacatcaaacttctcaaatgaaacttgatttgacatcaataaatcatctaaaatattttgaagttgagtattgta 224445  T
Q  176 atcgatgtagatcacctctttcttcccttcacaat 210  Q
    |||||||| ||||||||||||||||||||||||||    
T  224444 atcgatgttgatcacctctttcttcccttcacaat 224410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 26803 - 26675
Alignment:
Q  82 caacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgat 181  Q
    |||||||| ||||||||||||| |||   || |||||||||||| ||||| ||  |||||| | |||||||||||||||||||||||  ||| |||||||    
T  26803 caacaagatcaccacactgaacatcaaacttctcaaatgaaacttgatttgacaccaagaaataatctaaaatattttgaagttgagtattgtaatcgat 26704  T
Q  182 gtagatcacctctttcttcccttcacaat 210  Q
    || |||||||||||||||| |||||||||    
T  26703 gttgatcacctctttcttctcttcacaat 26675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 12124 - 11996
Alignment:
Q  82 caacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgat 181  Q
    |||||||| ||||||||| ||| |||   || |||||||||||| ||||| ||  |||||| |||||||||||||||||||||||||  ||| |||||||    
T  12124 caacaagatcaccacactaaacatcaaacttctcaaatgaaacttgatttgactccaagaaatcatctaaaatattttgaagttgagtattgtaatcgat 12025  T
Q  182 gtagatcacctctttcttcccttcacaat 210  Q
    || |||||||||||||||| | |||||||    
T  12024 gttgatcacctctttcttctcatcacaat 11996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2047 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold2047
Description:

Target: scaffold2047; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 239
Target Start/End: Original strand, 49 - 242
Alignment:
Q  45 atctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaacttcagttttttcaaatgaaactcgatttaacctcaagaatt 144  Q
    |||||||| | || |||||||  ||||||  |||||  ||||||| |||||||||||||||||  ||| |||||||  ||| ||||||| ||||| || |    
T  49 atctcaaccatctgcttctcacattcattcgctttcctaacaagatcaccacactgaacttcaaatttctcaaatggcacttgatttaatctcaaaaaat 148  T
Q  145 catctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcacaatatccactatgatgattttccccataaaaa 239  Q
    ||||||||||||||||||| ||||  ||| ||||||||| ||| | |||||||   ||||| |||  |||||| ||||||||  |||||||||||    
T  149 catctaaaatattttgaagctgag-tttgtaatcgatgttgattatctctttccgaccttcccaaattccactttgatgattcgccccataaaaa 242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 117788 - 117871
Alignment:
Q  127 gatttaacctcaagaattcatctaaaatattttgaagttgagagttgcaatcgatgtagatcacctctttcttcccttcacaat 210  Q
    ||||| || |||| || |||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||| |||||||||    
T  117788 gatttgacatcaaaaaatcatctaaaatattttgaagttgagtattgtaatcgatgttgatcacctctttcttctcttcacaat 117871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1755 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1755
Description:

Target: scaffold1755; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 168
Target Start/End: Complemental strand, 1036 - 874
Alignment:
Q  6 ggattttcttccactacaatagcatgacactcggtctttatctcaacaaacttcttctcatgttcatttactttctcaacaagaccaccacactgaactt 105  Q
    |||||||||||||| |||||| ||||||| |  ||||  |||| ||| |||||||||  |   | || | |||||| ||||||| ||| ||||||||| |    
T  1036 ggattttcttccaccacaatatcatgacaattagtctccatctgaaccaacttcttccgagactaatatgctttctgaacaagatcactacactgaacat 937  T
Q  106 cagttttttcaaatgaaactcgatttaacctcaagaattcatctaaaatattttgaagttgag 168  Q
    ||   ||||||||||||| |  |||| || ||||||| ||||||  |||||||| ||||||||    
T  936 caaccttttcaaatgaaaatttatttgacatcaagaaatcatcttgaatatttttaagttgag 874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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