View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_36 (Length: 226)
Name: NF21662_low_36
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43634072 - 43633854
Alignment:
| Q |
1 |
attcctcgtctgttttggaattgtcagtgctcaaaacaccaataaggctgccatcttcccgtaatctacgtgtgattgctcgtgtatcaacatcatctgt |
100 |
Q |
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| T |
43634072 |
attcctcgtctgttttggaattgtcagtgctcaaaacaccaataaggctgccatcttcccgtaatctacgtgtgattgctcgtgtatcaacatcatctgt |
43633973 |
T |
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| Q |
101 |
tgcatcacaaagtaccatcaaagtcaagaaaaatccagagtttacatgtaaagttcttgtcataacaactcttcagtcttcacatattacttacaaattc |
200 |
Q |
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| T |
43633972 |
tgcatcacaaagtaccatcaaagtcaagaaaaatccagagtttacatgtaaagttcttgtcataacaactc-------ttcacatattacttacaaattc |
43633880 |
T |
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| Q |
201 |
ccatgacattcctttcagttaagtaa |
226 |
Q |
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| T |
43633879 |
ccatgacattcctttcagttaagtaa |
43633854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 42962315 - 42962206
Alignment:
| Q |
1 |
attcctcgtctgttttggaattgtcagtgctcaaaacaccaataaggctgccatcttcccgtaatctacgtgtgattgctcgtgtatcaacatcatctgt |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |
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| T |
42962315 |
attcctcgtctgttttggaattgtcggtgctcaaaacaccaataaggcttccatcttctcgtaatctgcgtgtgattgcccgtgtatcaacatcatctgt |
42962216 |
T |
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| Q |
101 |
tgcatcacaa |
110 |
Q |
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| T |
42962215 |
tgcatcacaa |
42962206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 42962115 - 42962075
Alignment:
| Q |
186 |
attacttacaaattcccatgacattcctttcagttaagtaa |
226 |
Q |
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| T |
42962115 |
attacttacaaattcccatgacattcctttctgttaagtaa |
42962075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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