View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_6 (Length: 568)
Name: NF21662_low_6
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 15 - 509
Target Start/End: Complemental strand, 37135758 - 37135262
Alignment:
| Q |
15 |
cataggagtatgagaatttagatagatatttaacaaaaaagattcagcacgtcatgggtttcaaaactatatctggaccgttgattgagatcaaagtgtt |
114 |
Q |
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| T |
37135758 |
cataggagtatgagaatttagatagatatttaacaaaaa-gattcagcacgtcatgggtttcaaaactatatctggaccgttgattgagatcaaagtgtt |
37135660 |
T |
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| Q |
115 |
actatgtggaggaaggatctggactctcctagagataaggtttggcattacacatgggccccaagaatttggggatgagtatgggatagtcatgtgacac |
214 |
Q |
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| T |
37135659 |
actatgtggaggaaggatctggactctcctagagataaggtttggcattacacatgggccccaagaatttggggatgagtatgggatagtcatgtgacac |
37135560 |
T |
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| Q |
215 |
gtgtgtgagagaaaggactatcacgtgatatttccttttcatggagggttaagttccaaaaatacccatgactgttgatccaaattgggaagataaggcc |
314 |
Q |
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| T |
37135559 |
gtgtgtgagagaaaggactatcacgtgatatttccttttcatggagggttaagttccaaaaatacccatgactgttgatccaaattgggaagataaggcc |
37135460 |
T |
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| Q |
315 |
atccttacataaaatggcatta-ttttgtacctaggtactcctttgtcttttgctttattcaagtgttaaggttgttgactcagcacatgtttgttagca |
413 |
Q |
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| T |
37135459 |
atccttacataaaatgccattatttttgtacctaggtactcctttgtcttttgctttattcaagtgttaaggttgttgactcagcacatgtttgttagca |
37135360 |
T |
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| Q |
414 |
cggcgaatttgtgagaataatgattactatttattaatttttacattggttcaatgcgattatgt-aaaactcaacct-atatcgatcatgcatttaa |
509 |
Q |
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| T |
37135359 |
cggcgaatttgtgagaataatgatgactatttattaatttttacattggttcaatgcgattatgtaaaaactcaacctaatatcgatcatgcatttaa |
37135262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 37135242 - 37135202
Alignment:
| Q |
510 |
aattggattggattagatcagttatgcattcaaacaaaata |
550 |
Q |
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| T |
37135242 |
aattggattggattagatcagttatgcattcaaacaaaata |
37135202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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