View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_7 (Length: 564)
Name: NF21662_low_7
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 2391329 - 2390784
Alignment:
| Q |
1 |
ccataaatcctttgccgcttagt-attgatcacatattttctttgtctaagtattaagtttatgataccttcattatcatgtgactttttcttcaaaatc |
99 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||| |
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| T |
2391329 |
ccataaatcctttgccgcttagttattgatcacatattttctttgtctaagtattaagtttatgatatcttcattattatgtgactgtttcttcaaaatc |
2391230 |
T |
|
| Q |
100 |
cgtccacattaaaattaaaaagacatgcttgcctcaaatacaaaaaatcgacaagacaccattttatcctcaatattttgttcttgactcttgagttgta |
199 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391229 |
cgtccacattaaaattaaaaagacatgcttacctcaaatacaaaaaatcgacaagacaccattttatcctcaatattttgttcttgactcttgagttgta |
2391130 |
T |
|
| Q |
200 |
actatcaactttatttcttcccttttcaataagattttccatatttgtttctgttactgatacagataataactgaattattaggcctaacctaacggtg |
299 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
2391129 |
actatctactttatttcttcccttttcaataagattttccatatttgtttctgttactgttacagataataactgaattattaggcc-----taacggtg |
2391035 |
T |
|
| Q |
300 |
ccaaaaatatataactctttgtatctcttgatttttgcttagtaaatagataaacagttacaatctttatttctagatc----acatatagttggaagaa |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2391034 |
ccaaaaatatataactctttgtatctcttgatttttgcttagtaaatagataaacagttacaatctttatttctagatcacatacatatagttggaagaa |
2390935 |
T |
|
| Q |
396 |
attggcctttcattttcaatcttcacgaaaaaactttgtttgtcacaagaaagttgtcatgggaagcttgtgatttttcatctgctgaaccaattctgtc |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2390934 |
attggcctttcattttcaatcttcacgaaaaaactttgtctgtcacaagaaagttgtcatgggaagcttgtgatttttcatctgctgaaccaattctgtc |
2390835 |
T |
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| Q |
496 |
acatcaaagttggttttcttaacttctgataaatcagtttttggtgttcat |
546 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2390834 |
acatcaaagttggttttcttaacttctgataaatcagtttttggtgttcat |
2390784 |
T |
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