View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_9 (Length: 528)
Name: NF21662_low_9
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 10075949 - 10075435
Alignment:
| Q |
1 |
agagactgaggtaatctaaccttgatatatatgttgtgattttaatgatcacatatacaaaattaaggtttaagagacacacgatgatcgtctca----- |
95 |
Q |
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| T |
10075949 |
agagactggggtaatctagccttggtatatatattgtaatgttaatgatcacagatacaaaagtagggtttaagagacatgcaatgatcgtctcaactca |
10075850 |
T |
|
| Q |
96 |
tattttgagacgattatga-taacatatcatttagggtttgagaaacatgcgatcggagagcaagtattagaggattgactatcctcatcgttatttagt |
194 |
Q |
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||||||||||||||||||| |||| |||||||||| |||||||| ||||| |||| |||||||||| | ||||||||||||||| ||||||| ||||||| |
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| T |
10075849 |
tattttgagacgattatgaataacgtatcatttagagtttgagagacatgtgatcagagagcaagtgtgagaggattgactatcgtcatcgtcatttagt |
10075750 |
T |
|
| Q |
195 |
gtatccatactctaattgtctaatgagacaacaattaaataattaaacggttgtggacagagacccttcattatgataattgacaaaataattcaactca |
294 |
Q |
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||||||||||||||| |||||||| |||||| ||||||| |||||||||||| | |||||| |||||| | | |||||||||||||||||||||||| |
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| T |
10075749 |
gtatccatactctaaccgtctaatgtgacaacggttaaatagttaaacggttgtaggcagagatccttcaattggctaattgacaaaataattcaactca |
10075650 |
T |
|
| Q |
295 |
tcattgtccattcaaaaacatagctcaatcaaataattcatcggttactagtaagtacttaataacaatatactctaaccctacgcacaaaacaaaaaat |
394 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10075649 |
tcatggtccattcaaaaacatagctcaatcaaataattcatcggttactagtacgtacttaataacaatatactctaaccctacgcacaaaacaaaaaat |
10075550 |
T |
|
| Q |
395 |
atattgaacctatttttatcaaaactgttctaattctaattgcttggtttttgaaggggtttgatgcatcagtattgttaaaggacacaccaactttcaa |
494 |
Q |
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| T |
10075549 |
atattgaaactatttttatcaaaactgttctaattctaattgcttgatttttgaaggggtgtgatgcatcagtattgttaaaggacacaccaactttcaa |
10075450 |
T |
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| Q |
495 |
gggagaacaaaatgc |
509 |
Q |
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| T |
10075449 |
gggagaacaaaatgc |
10075435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 434 - 509
Target Start/End: Complemental strand, 10084286 - 10084211
Alignment:
| Q |
434 |
ttgcttggtttttgaaggggtttgatgcatcagtattgttaaaggacacaccaactttcaagggagaacaaaatgc |
509 |
Q |
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||||||| ||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||| |
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| T |
10084286 |
ttgcttgatttttgaaggggtgtgatgcatcagtattgttgaaagacacaccaactttccagggagaacaaaatgc |
10084211 |
T |
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