View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21663_high_6 (Length: 226)
Name: NF21663_high_6
Description: NF21663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21663_high_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 47249685 - 47249910
Alignment:
| Q |
1 |
acaacatttgtaagaatataaaaacagttgttgagggcttacgatgcaatgagcatggatgaaacacggagcaactgaagcttagatctgctgacaggtt |
100 |
Q |
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| T |
47249685 |
acaacatttgtaagaatataaaaacagttgttgagggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggtt |
47249784 |
T |
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| Q |
101 |
caatagataagaatctgtcaatgtatgaaactgacagatgaagtgtctcgggaagaagcttgtattcatctgcaacctcaactaaccaatcaaccaatgt |
200 |
Q |
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| T |
47249785 |
caatagataagaatctgtcaatgtatgaaactgacagatgaagtgtctcgggaagaagcttgtattcatctgcaacctcaactaaccaatcaaccaatgt |
47249884 |
T |
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| Q |
201 |
ccccctcatgtttgatgaaatccctc |
226 |
Q |
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| T |
47249885 |
ccccctcatgtttgatgaaatgcctc |
47249910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 26 - 226
Target Start/End: Original strand, 47242881 - 47243081
Alignment:
| Q |
26 |
agttgttgagggcttacgatgcaatgagcatggatgaaacacggagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgta |
125 |
Q |
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| T |
47242881 |
agttgttgagatcttacgatgcaatgagcatggatgaaacaccaagcaactgaagcttagatctaatgataggttggttagataagaatctatcaatgta |
47242980 |
T |
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| Q |
126 |
tgaaactgacagatgaagtgtctcgggaagaagcttgtattcatctgcaacctcaactaaccaatcaaccaatgtccccctcatgtttgatgaaatccct |
225 |
Q |
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| T |
47242981 |
tgaaacagagagatgaagggtttctggaagaagcgtgtattcatctgcaacctcaaccaaccaatcaaccaatgtgcccctcatgtttgatgtaatgcct |
47243080 |
T |
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| Q |
226 |
c |
226 |
Q |
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| T |
47243081 |
c |
47243081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 47254150 - 47254321
Alignment:
| Q |
38 |
cttacgatgcaatgagcatggatgaaacacggagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgtatgaaactgacag |
137 |
Q |
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| T |
47254150 |
cttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattggacaggaatctgtcaatgtatgaaacagcaag |
47254249 |
T |
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| Q |
138 |
atgaagtgtctcgggaagaagcttgtattcatctgcaacctcaactaaccaatcaaccaatgtccccctcat |
209 |
Q |
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| T |
47254250 |
atgaagggtttgagggagaagcttgtattcttcagcaacctcaaccaaccaatcaaccagtatccctctcat |
47254321 |
T |
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