View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21663_low_1 (Length: 525)
Name: NF21663_low_1
Description: NF21663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21663_low_1 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 4605784 - 4606308
Alignment:
| Q |
1 |
ccattttcaacataaccctcaatcatagcattccaagacaccacatttttatcaggggtatcatcaaaaacctttctcgcttcctccaaatcaccattcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4605784 |
ccattttcaacataaccctcaatcatagcattccaagacaccacatttttatcaggggtatcatcaaaaacctttctcgcttcctccaaatcaccattcc |
4605883 |
T |
|
| Q |
101 |
taatcaagcccaccaccatcgagttccacgaaacaacattcctctcaggcatttcatcaaacaccttcctcgcatcatcaatccaccccaaaccagcata |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4605884 |
taatcaaacccaccaccatcgagttccacgaaacaacattcctctcaggcatttcatcaaacaccttcctcgcatcatcaatccaccccaaaccagcata |
4605983 |
T |
|
| Q |
201 |
cccactaagcattgcagtccaagacacaacatttctcttcggcatatcatcgaaaaaccgtttcgcttgacgggtcataccagattgaagatatgcggac |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4605984 |
cccactcagcattgcagtccaagacacaacatttctctccggcatatcatcaaaaaaccgtttcgcttgacgggtcataccagattgaagatatgcggac |
4606083 |
T |
|
| Q |
301 |
aacattgcattgtaagtgacaatgtttctatgaggcattatatcaaacaagtttcgtgcttgttcaacgtaaccatgtttagcgtagttggtgagcatgg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4606084 |
aacattgcattgtaagtgacaatgtttctatgaggcattatatcaaacaagtttcgtgcttgttcaacgtaaccatgtttagcatagttggtgagcatgg |
4606183 |
T |
|
| Q |
401 |
aagtccagtgaacaacacaggagtggatgtttccggatgggaaagagtgaagaattgttcgtgcttcgtgaagaaacccatttgttaggtagtgaaggag |
500 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4606184 |
aagtccagtgaacaacacgggagtggatgtttccggatgggaaagagtgaagaattgttcgtgcttcgtgaagaaacccatttgttaggtagtgaaggag |
4606283 |
T |
|
| Q |
501 |
ctgagattcgtcgcattcgtagtga |
525 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4606284 |
ctgagattcgtcgcattcgtagtga |
4606308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 989630 - 989588
Alignment:
| Q |
125 |
tccacgaaacaacattcctctcaggcatttcatcaaacacctt |
167 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
989630 |
tccacgacacaacatttctctcaagcatttcatcaaacacctt |
989588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 12011428 - 12011469
Alignment:
| Q |
132 |
aacaacattcctctcaggcatttcatcaaacaccttcctcgc |
173 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
12011428 |
aacaacattccgctcaggcatttcatcaaacaacttcctcgc |
12011469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 32743592 - 32743536
Alignment:
| Q |
125 |
tccacgaaacaacattcctctcaggcatttcatcaaacaccttcctcgcatcatcaa |
181 |
Q |
| |
|
|||||||||| ||||||||| || |||||| |||||||||||||| | ||||||||| |
|
|
| T |
32743592 |
tccacgaaaccacattcctcacacgcattttatcaaacaccttccacccatcatcaa |
32743536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 32443705 - 32443754
Alignment:
| Q |
128 |
acgaaacaacattcctctcaggcatttcatcaaacaccttcctcgcatca |
177 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
32443705 |
acgaaccaacattcctctgaggcatttcatcaaacaccttcatagcatca |
32443754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 24362671 - 24362624
Alignment:
| Q |
120 |
cgagttccacgaaacaacattcctctcaggcatttcatcaaacacctt |
167 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||| |||||||||||| |
|
|
| T |
24362671 |
cgagttccacgaaaccaaattcctctgaggcattttatcaaacacctt |
24362624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 24700865 - 24700914
Alignment:
| Q |
120 |
cgagttccacgaaacaacattcctctcaggcatttcatcaaacaccttcc |
169 |
Q |
| |
|
||||||||| ||||||||| | || || |||||||||||||||||||||| |
|
|
| T |
24700865 |
cgagttccaagaaacaacacttctttccggcatttcatcaaacaccttcc |
24700914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 27516832 - 27516864
Alignment:
| Q |
136 |
acattcctctcaggcatttcatcaaacaccttc |
168 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
27516832 |
acattcctttcaggcatttcatcaaacaccttc |
27516864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 38095843 - 38095803
Alignment:
| Q |
125 |
tccacgaaacaacattcctctcaggcatttcatcaaacacc |
165 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
38095843 |
tccacgaaacaacattccgttcaggcattttatcaaacacc |
38095803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University