View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21663_low_3 (Length: 432)
Name: NF21663_low_3
Description: NF21663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21663_low_3 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 372
Target Start/End: Original strand, 36126855 - 36127209
Alignment:
| Q |
15 |
cacagacacacacacaattactaacaacgattaaataactaaaccttcgcaaaactaaaaccttcaccagtcataccatacctgcatttttgcatctcaa |
114 |
Q |
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| T |
36126855 |
cacagacacacacacaattactaacaacgattaaataactaaac-----------------cttcaccagtcataccatacctgcatttttgcatctcaa |
36126937 |
T |
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| Q |
115 |
aaaacaaaccacgtgcctgatccgttctattatgcctagcatgcaacctaatcatcatgttgtacatatctgttctggcacaataatttttctgattctt |
214 |
Q |
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| T |
36126938 |
aaaacaaaccacgtgcctgatccgttctattatgcctagcatgcaacctaatcatcatgttgtatatatctgttctggcacaataatttttctgattctt |
36127037 |
T |
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| Q |
215 |
catccagctgaaaactaagttacagtgttcaattgaacctcgttgtgtcaactcctatcaaatatgaaaatac--------------aattgtattgttt |
300 |
Q |
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| T |
36127038 |
catccagctgaaaactaagttacagtgttcaattgaacctcgttgtgtcaactcctatcaaatatgaaaatacaatgcacaatgattaattgtattgttt |
36127137 |
T |
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| Q |
301 |
aagctaaaattgagtcagaagcttctaagtgtatgtttggttccacttcaggaagagccaaaattgattctg |
372 |
Q |
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| T |
36127138 |
aagctaaaattgagtcagaagcttctaagtgtatgtttggttccacttcaggaagagccaaaattgattctg |
36127209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 36127373 - 36127305
Alignment:
| Q |
364 |
ttgattctgctttgacaaaaattgacagttgaaaataaagtgatttatggtagtttgagtgcaaaaatc |
432 |
Q |
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| T |
36127373 |
ttgattctgctttgacaaaaattgacagttgaaaataaagtgatttatggtagtttgagtgctaaaatc |
36127305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 15050181 - 15050226
Alignment:
| Q |
325 |
ctaagtgtatgtttggttccacttcaggaagagccaaaattgattct |
371 |
Q |
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| T |
15050181 |
ctaagtgtatgtttggttccactt-tggaggagccaaaattgattct |
15050226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 8130851 - 8130892
Alignment:
| Q |
330 |
tgtatgtttggttccacttcaggaagagccaaaattgattct |
371 |
Q |
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| T |
8130851 |
tgtatgtttggttccacttctggaggagccaaaattgattct |
8130892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 367
Target Start/End: Complemental strand, 14307 - 14268
Alignment:
| Q |
328 |
agtgtatgtttggttccacttcaggaagagccaaaattga |
367 |
Q |
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| T |
14307 |
agtgtatgtttggttccacttttggaagagccaaaattga |
14268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 30251625 - 30251670
Alignment:
| Q |
324 |
tctaagtgtatgtttggttccacttcaggaagagccaaaattgatt |
369 |
Q |
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| T |
30251625 |
tctaagtgtatgtttggttccacatttggaggagccaaaattgatt |
30251670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 35495146 - 35495194
Alignment:
| Q |
323 |
ttctaagtgtatgtttggttccacttcaggaagagccaaaattgattct |
371 |
Q |
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| T |
35495146 |
ttctaagtgtatgtttggttccacttttggagcacccaaaattgattct |
35495194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 15368136 - 15368177
Alignment:
| Q |
330 |
tgtatgtttggttccacttcaggaagagccaaaattgattct |
371 |
Q |
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| T |
15368136 |
tgtatgtttggttccacttttggaggagccaaaattgattct |
15368177 |
T |
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