View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21664_high_2 (Length: 353)
Name: NF21664_high_2
Description: NF21664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21664_high_2 |
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| [»] scaffold0227 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 35390128 - 35389783
Alignment:
| Q |
1 |
ttgatcacccactccaatcttccacccaaatctttcaatttaagctaaaaggaacgagatgtaagttgtgtttttcccttttctctccgaatttcaaact |
100 |
Q |
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| T |
35390128 |
ttgattacccactccaatcttccacccaaatctttcaatttaagctaaaaggaacgagatgtaagttgtgtttttcccttttctctccgaatttcacact |
35390029 |
T |
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| Q |
101 |
tttcaccgtaaatctcatttctcaatttttgtttgagtttaagctcttccatgtggatatcttggaatggaaccacaatgtagtaaataaatactttgat |
200 |
Q |
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| T |
35390028 |
tttcaccgtaaatctcatttctcaatttttgtt-gagtttaagctcttccatgtggatatcttggaatggaaccacaatgtagtaaataaatactttgat |
35389930 |
T |
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| Q |
201 |
ttttggagtctaacaatattcccatttacaattatttgtatgctaaaccttattaccttcaacttgtaattatgttttcatgaaccagtaatgaatatca |
300 |
Q |
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| T |
35389929 |
ttt-ggagtctaacaatattcccatttacaattatttgtatgctaaaccttattaccttcaacttgtaattatgttttcatgaaccagtaacgaatatca |
35389831 |
T |
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| Q |
301 |
aaatgacctactcaattttgtttcagtaattgtctcctctctgcttct |
348 |
Q |
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| T |
35389830 |
aaatgacctactcaattttgtttcagtaattgtctcctctgtgcttct |
35389783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 28084393 - 28084445
Alignment:
| Q |
301 |
aaatgacctactcaattttgtttcagtaattgtctcctctctgcttctccaca |
353 |
Q |
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| T |
28084393 |
aaatgacctactaaattttgtttcagtaattgcctcccctgtgcttctgcaca |
28084445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 15317 - 15212
Alignment:
| Q |
29 |
aatctttcaatttaagctaaaaggaacgagatgtaagttgtgtttttccc-ttttctctccgaatttcaaacttttcaccgtaaatctcatttctcaatt |
127 |
Q |
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||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||| ||||||| |||||||||| ||||||||||||||||| |
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| T |
15317 |
aatctttcaatttaagctaaaaggaacaacatgtaagttgtatttttccctttttctctccaaatttcacacttttcacccaaaatctcatttctcaatg |
15218 |
T |
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| Q |
128 |
tttgtt |
133 |
Q |
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| T |
15217 |
tttgtt |
15212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 14992 - 14929
Alignment:
| Q |
274 |
gttttcatgaaccagtaatgaatatcaaaatgacctactcaattttgtttcagtaattgtctcc |
337 |
Q |
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| T |
14992 |
gttttcatgaaccagtaacaaatatcgaaatgacctactcaattttgtttcagtgattgtctcc |
14929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 15188 - 15121
Alignment:
| Q |
163 |
tggaatggaaccacaatgtagtaaataaatactttgatttttggagtctaacaatattcccatttacaattat |
235 |
Q |
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| T |
15188 |
tggaatggaaccacaatgtagtaaata----ctttgaattttg-agtttattaatattcccatttacaattat |
15121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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