View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21664_high_5 (Length: 327)
Name: NF21664_high_5
Description: NF21664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21664_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 27 - 298
Target Start/End: Complemental strand, 32103519 - 32103249
Alignment:
| Q |
27 |
tcataaactttttctaaaagatcgcctaaacagtatcacaagtgtttataccggtagataaacataaatgagtctatccagacaaacctatatcatgaac |
126 |
Q |
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| T |
32103519 |
tcataaactttttctaaaagatcgcctaaacagtatcacaagtgtttatactggtagataaacataa-tgagtctatccagacaaacctatatcacgaac |
32103421 |
T |
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| Q |
127 |
tttattgtatgcaggcgttcaaaatagctgtggccgattctgatacagttttgagccctctaatgcgtgaaatcaaggaagttgatcctgatgggaaagc |
226 |
Q |
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| T |
32103420 |
tttattgtatgcaggcgttcaagatagctgtggccaattctgatacggttttgagccctctaatgcgtgaaatcaaggaagttggtcctgatgggaaagc |
32103321 |
T |
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| Q |
227 |
ggtgaccaaggtggtacctgctgtgtctgaagaagtgaagaattctctactgatgaacactagaagacgaat |
298 |
Q |
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| T |
32103320 |
ggtgaccaaggtggtaccttctgtgtctgaagaaatgaagaattctctactgatgaacattagaagacgaat |
32103249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 118 - 274
Target Start/End: Complemental strand, 32109273 - 32109117
Alignment:
| Q |
118 |
atcatgaactttattgtatgcaggcgttcaaaatagctgtggccgattctgatacagttttgagccctctaatgcgtgaaatcaaggaagttgatcctga |
217 |
Q |
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| T |
32109273 |
atcatgaactttattgtatgcaggcattcaaaattgttgtggcagatcctgataaggttttgagcactctcacgcgtgagatcaaggaagttggtcctga |
32109174 |
T |
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| Q |
218 |
tgggaaagcggtgaccaaggtggtacctgctgtgtctgaagaagtgaagaattctct |
274 |
Q |
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| T |
32109173 |
tgggcaagaagtgaccaaggtggtacctgctgtatctgaagaactgaaggattctct |
32109117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 41 - 298
Target Start/End: Complemental strand, 32117637 - 32117371
Alignment:
| Q |
41 |
taaaagatcgcctaaacagtatcacaagtgtttataccggtagataaac----at---aaatgagtctatccagacaaacctat--atcatgaactttat |
131 |
Q |
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| T |
32117637 |
taaaagatctcctgaacaggatcactagtgtttatactggtagataaactcaaatgtcaaatgagtcaatccaaacagacccctgcatcatagactttat |
32117538 |
T |
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| Q |
132 |
tgtatgcaggcgttcaaaatagctgtggccgattctgatacagttttgagccctctaatgcgtgaaatcaaggaagttgatcctgatgggaaagcggtga |
231 |
Q |
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| T |
32117537 |
tgtgtacaggcgttcaaaagagttttggctgatcctgatgcggttttgagcgcactcacgcgtgaaatcaaggaagttggtcctgatgggcaagaagtga |
32117438 |
T |
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| Q |
232 |
ccaaggtggtacctgctgtgtctgaagaagtgaagaattctctactgatgaacactagaagacgaat |
298 |
Q |
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| T |
32117437 |
ctaaggtggtacctgctgtatctgaagaagtgaaggaatctctactgatgaatattagaagacgaat |
32117371 |
T |
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