View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21665_high_1 (Length: 525)

Name: NF21665_high_1
Description: NF21665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21665_high_1
NF21665_high_1
[»] chr4 (3 HSPs)
chr4 (1-525)||(54504350-54504876)
chr4 (288-409)||(54496539-54496660)
chr4 (471-504)||(54504921-54504954)


Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 54504350 - 54504876
Alignment:
Q  1 actcacccgttgggcctctaactaccaattcatagtcggtgacactatcagtaagtaatagtaacacccttcttaatttccttatcttcaacataatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54504350 actcacccgttgggcctctaactaccaattcatagtcggtgacactatcagtaagtaatagtaacacccttcttaatttccttatcttcaatataatttt 54504449  T
Q  101 cttgcatatatatatcgtgtaaacaaatgttgatatattaattgtggctccatagtatacgtaaaataaatttgataatatatactccatattgatgcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  54504450 cttgcatatatatatcgtgtaaacaaatgttgatatattaattgtggctccatagtatacgtaaaataaatttgataata----ctccatattgatgcat 54504545  T
Q  201 at------atattgtacagcgtttcagtacaataacaaaacagaatcggtacacgaagtggaagaggaagactatgatagatgtagaataagaggagagc 294  Q
    ||      |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  54504546 atatatatatattgtacagcatttcagtacaataacaaaacagaatcggtacacgaagtggaagaggaagactatgatagatgtggaataagaggagagc 54504645  T
Q  295 atgtagaccactacgacggcaatacaatggtggtgcttaagaaaacaggaatacatcatttcataagtggaaaaaagcgtcattgcaggttgggtttaaa 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54504646 atgtagaccactacgacggcaatacaatggtggtgcttaagaaaacaggaatacatcatttcataagtggaaaaaagcgtcattgcaggttgggtttaaa 54504745  T
Q  395 gctagctgttgttgttatggcagctcccatactttcttcccctcctccgccaccttcaccacccacgccttggtcatcaactccaattcctcatcctcgg 494  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |    
T  54504746 gctagctgttgttgttatggtagctcccgtactttcttcccctcctccgccgccttcaccacccacgcctcggtcatcaactccaattcctcatcctccg 54504845  T
Q  495 agacgttcactgccttcacctccttcaccgt 525  Q
    |||||||||||||||||||||||||||||||    
T  54504846 agacgttcactgccttcacctccttcaccgt 54504876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 409
Target Start/End: Original strand, 54496539 - 54496660
Alignment:
Q  288 ggagagcatgtagaccactacgacggcaatacaatggtggtgcttaagaaaacaggaatacatcatttcataagtggaaaaaagcgtcattgcaggttgg 387  Q
    ||||| ||||| || ||| |||||||||| || | ||| |||||| | |||| |||| || |||||||||||||||||| |||||||||||||| | |||    
T  54496539 ggagaacatgtggagcaccacgacggcaacactaaggttgtgcttgataaaataggagtatatcatttcataagtggaacaaagcgtcattgcaagatgg 54496638  T
Q  388 gtttaaagctagctgttgttgt 409  Q
    | |||||||| ||||| |||||    
T  54496639 gattaaagctggctgtcgttgt 54496660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 504
Target Start/End: Original strand, 54504921 - 54504954
Alignment:
Q  471 tcaactccaattcctcatcctcggagacgttcac 504  Q
    ||||||||||||||||||||||||| ||||||||    
T  54504921 tcaactccaattcctcatcctcggaaacgttcac 54504954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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