View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21665_high_10 (Length: 329)
Name: NF21665_high_10
Description: NF21665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21665_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 58 - 309
Target Start/End: Original strand, 413150 - 413401
Alignment:
| Q |
58 |
tatatatatgtttgtgttgttgtctgtttaatcctaactttcaacttgttgccttgtctatatattcagtccacgtcttggaagtgccctgtctatgtca |
157 |
Q |
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| T |
413150 |
tatatatatgtttgtgttgttgtctgtttaatcctaactttcaacttgttgccttgtctatatattcagtccacgtcttggaagtgccctgtctatgtca |
413249 |
T |
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| Q |
158 |
aaagggattcaattctgaattccaagatgattattgatcgccgccagtccttgagatcctccaaaaggcttagtgaaactggaaaaacatctctgccaat |
257 |
Q |
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| T |
413250 |
aaagggattcaattctgaattccaagatgattatcgatcgccgccagtccttgagatcctccaaaaggcttagtgaaactggaaaaacatccctgccaat |
413349 |
T |
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| Q |
258 |
atcctcaagagaacagtcttctgcttctgatggcaaccaacaacctgatgat |
309 |
Q |
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| T |
413350 |
atcctcaagagaacagtcttctgcttctgatggcaaccaacaacctgatgat |
413401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 37195845 - 37195790
Alignment:
| Q |
83 |
gtttaatcctaactttcaacttgttgccttgtctatatattcagtccacgtcttgg |
138 |
Q |
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| T |
37195845 |
gtttgatcctaactttcaacttgttgctttgtgtatatgttcagtccgagtcttgg |
37195790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 37203571 - 37203462
Alignment:
| Q |
193 |
gatcgccgccagtccttgagatcctccaaaaggctta---gtgaaactggaaaaacatctctgccaatatcctcaagagaacagtcttctgcttctgatg |
289 |
Q |
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| T |
37203571 |
gatcgccgccactccttgagatcctgcagaaggcttatagaagaaactggaacagcatccctgccaagatcttcaagagaaggttcttctgcccctgatg |
37203472 |
T |
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| Q |
290 |
gcaaccaaca |
299 |
Q |
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| T |
37203471 |
acaaccaaca |
37203462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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