View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21665_high_14 (Length: 319)
Name: NF21665_high_14
Description: NF21665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21665_high_14 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 3 - 316
Target Start/End: Original strand, 33814564 - 33814877
Alignment:
| Q |
3 |
aagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatggttgcaa |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33814564 |
aagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatggttacaa |
33814663 |
T |
|
| Q |
103 |
tccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttca |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33814664 |
tccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgggtgttca |
33814763 |
T |
|
| Q |
203 |
aactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatatt |
302 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33814764 |
aactcaagtctgaagagaacaacccaaaccccaagtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatatt |
33814863 |
T |
|
| Q |
303 |
ctcaccggtggtga |
316 |
Q |
| |
|
|||||||||||||| |
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| T |
33814864 |
ctcaccggtggtga |
33814877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 316
Target Start/End: Original strand, 33809826 - 33809959
Alignment:
| Q |
184 |
aaaaataaatgggtgttcaaact-caagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtg-ccatcaaaagaaagg |
281 |
Q |
| |
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|||||||||||||| |||||||| ||| | | ||| || |||||||| ||||| |||||||||| |||||| |||||||||||| || |||||||||||| |
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| T |
33809826 |
aaaaataaatgggttttcaaacttcaattttaaaggga-caacccaacccccaagtacaaagcatgaattggtgtgaaggggtgcccttcaaaagaaagg |
33809924 |
T |
|
| Q |
282 |
cattgattttgaagaaatattctcaccggtggtga |
316 |
Q |
| |
|
||||||||||||| |||| || || |||||||||| |
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| T |
33809925 |
cattgattttgaaaaaatgttttccccggtggtga |
33809959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 662 - 977
Alignment:
| Q |
1 |
agaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatggttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
662 |
agaagatacttctcaggtgaatatgtaaacttcacaaaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatggttgc |
761 |
T |
|
| Q |
101 |
aatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgtt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
762 |
aatccatggaagaagagatgcaatccctaaaggagaatgaaacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgggtgtt |
861 |
T |
|
| Q |
201 |
caaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
862 |
caaactcaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaata |
961 |
T |
|
| Q |
301 |
ttctcaccggtggtga |
316 |
Q |
| |
|
|||||||||||||||| |
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| T |
962 |
ttctcaccggtggtga |
977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 9754589 - 9754277
Alignment:
| Q |
1 |
agaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatggttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
9754589 |
agaagatacttctcaggtgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatggttgt |
9754490 |
T |
|
| Q |
101 |
aatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgtt |
200 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |
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| T |
9754489 |
aatccatggaagaagagatgcaatccctaaaggagaatgagacgtatgacctggtaaaattgccaaatggaaagagggcattgaaaaataaatgggtgtt |
9754390 |
T |
|
| Q |
201 |
caaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaata |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9754389 |
caaacttaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaata |
9754290 |
T |
|
| Q |
301 |
ttctcaccggtgg |
313 |
Q |
| |
|
|||||| |||||| |
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|
| T |
9754289 |
ttctcatcggtgg |
9754277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 54969485 - 54969170
Alignment:
| Q |
1 |
agaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatggttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
54969485 |
agaagatacttctcaggtgaatatgtaaacttcaccgaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatggttgc |
54969386 |
T |
|
| Q |
101 |
aatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgtt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54969385 |
aatccatggaagaagagatgcaatccctaaaggagaatgacacgtatgacctggtcaaattaccagatggaaagagggcattgaaaaataaatgggtgtt |
54969286 |
T |
|
| Q |
201 |
caaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
54969285 |
taaactcaagtctgaagagaacaacccaaatcccagatacaaggcacgaatagtcgtgaaggggtgccatcaaaagaaagacgttgattttgaagaaata |
54969186 |
T |
|
| Q |
301 |
ttctcaccggtggtga |
316 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
54969185 |
ttctcaccggtggtga |
54969170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 4284292 - 4283994
Alignment:
| Q |
7 |
tacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatggttgcaatcca |
106 |
Q |
| |
|
||||||||| |||| || ||||||| ||| | ||| |||||||||||||| |||||||||| |||||||||||||||||| |||||||| |||||| || |
|
|
| T |
4284292 |
tacttctcacatgaaaatataaattttactaatgaaagggaacctcaaagcatcatggaagccatagagacaaccaataagcaaaaatggctgcaatgca |
4284193 |
T |
|
| Q |
107 |
tggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttcaaact |
206 |
Q |
| |
|
| ||||||| ||| ||||||||||||||| | || |||||| |||||||||||| ||||||| |||||||||||||||||| |||||||||| || |
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|
| T |
4284192 |
ttcaagaagaaatgccatccctaaaggagaaccaaacatatgacttggtaaaattactgaatggaaatagggcattgaaaaataaacgggtgttcaagct |
4284093 |
T |
|
| Q |
207 |
caagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctca |
306 |
Q |
| |
|
|| ||||||| |||||||| ||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
4284092 |
catgtctgaatagaacaactcaaaccctaggtacaaagcacga---gtcgtgaaggaatgccatcaaaagaaaggcattgattttgaagaaaaattctca |
4283996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13563762 - 13563709
Alignment:
| Q |
1 |
agaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaa |
54 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
13563762 |
agaagatacttctcaggtgaatatgtaaacttcactaaggaaggcgaacctcaa |
13563709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 116 - 316
Target Start/End: Complemental strand, 4837704 - 4837504
Alignment:
| Q |
116 |
agatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttcaaactcaagtctga |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
4837704 |
agatgcaatccctaaaggagaatgagacgtatgatctggtaaaattaccagatggaaagagggcgttgaaaaacaagtgggtgttcaaactcaagtctga |
4837605 |
T |
|
| Q |
216 |
agagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctcaccggtggtg |
315 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4837604 |
agagaacaacccaaatcccatatacaaagcacaaatagtcgtgaaggggtgccatcgaaagaaaggcattgattttgaagaaatattctcaccagtggtg |
4837505 |
T |
|
| Q |
316 |
a |
316 |
Q |
| |
|
| |
|
|
| T |
4837504 |
a |
4837504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 4837787 - 4837703
Alignment:
| Q |
3 |
aagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataag |
87 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4837787 |
aagatacttctcagttgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataag |
4837703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 179 - 315
Target Start/End: Complemental strand, 1130219 - 1130083
Alignment:
| Q |
179 |
cattgaaaaataaatgggtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaa |
278 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |||||| |||||||||| || |
|
|
| T |
1130219 |
cattgaaaaataattggatgttcaaactcaagtctgaagagaacaagttgaaccccgggtacaaagcacgaattgtcgctaaggggcgccatcaaaataa |
1130120 |
T |
|
| Q |
279 |
aggcattgattttgaagaaatattctcaccggtggtg |
315 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
1130119 |
aggcaatgattttgaagaaatattctcatcggtggtg |
1130083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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