View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21665_high_17 (Length: 313)
Name: NF21665_high_17
Description: NF21665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21665_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 46039319 - 46039041
Alignment:
| Q |
1 |
acaatacagtgatctagcagaagctaatgatgccccaatatagatgttttagtctatcaatgaggtgtcagtttagtggtaagaatttgatcttttatcc |
100 |
Q |
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| T |
46039319 |
acaatacagtgatctagcagaagctaatgatgccccaatatagatgttgtagtctatcaatgaggtgtcagtttagtggtaagaatttgatcttttatcc |
46039220 |
T |
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| Q |
101 |
tcaagagatattcaaacctcctagggaacactagtaaaatagtcattaatgtcgctttaattaatgatagaatcttaattttannnnnnnncaattcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||||| |
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| T |
46039219 |
tcaagagatattcaaacctcctagggaacactggtaaaatagtcattaatgtcgctttaattaacgatagaatctgaatttga-tttttttcaattcttc |
46039121 |
T |
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| Q |
201 |
ttgagattagttatatgctttaaatagtgaggatgtttttatatacaaacttttagcatgtcagcatttgcatgtgtctat |
281 |
Q |
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| T |
46039120 |
ttgagattaagt-tatgctttaaatagtgaggatgtttttatatacaaacttttagcatgtcagcatttgcatgtgtctat |
46039041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 46039019 - 46038987
Alignment:
| Q |
281 |
tatagatgattgtatcttgatttcaatggatat |
313 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
46039019 |
tatagatgattgtatcttgatttcaatggatat |
46038987 |
T |
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