View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21665_high_18 (Length: 306)
Name: NF21665_high_18
Description: NF21665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21665_high_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 3731621 - 3731327
Alignment:
| Q |
10 |
attattcttctagggaatgtctaatttctcaaagcctgcaaggtacatcttcatggaaattcagaagattgatagcagttattatcctgaggtacttttt |
109 |
Q |
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| T |
3731621 |
attattcttctagggaatgtctaatttctcaaagcctgcaaggtacatcttcatggaaattcagaagattgatagcagttattatcctgaggtacttttt |
3731522 |
T |
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| Q |
110 |
gttgatcatagctcatgagcagatgatttggatatatgtgacatgactgctattttaatgtgtgattaggttagattatttgataatatgacaatggtta |
209 |
Q |
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| T |
3731521 |
gttgatcatagctcatgagcagatgatttggatatatgtgacatgaatgcta--ttaatgtgtgattaagttagattatttgataatatgacaatggtta |
3731424 |
T |
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| Q |
210 |
tatagttttcaaagtttacaacaataataacataaaaagttaaagacgaattcttaaatttttattgtagtagtttccctattgaagttgattaaag |
306 |
Q |
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| T |
3731423 |
tatagttttcaaagtttacaacaataataacataaaaagttaaagacgaattcttaaatttttattgtagtagtttccctattgaagttgattaaag |
3731327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 11683935 - 11683800
Alignment:
| Q |
10 |
attattcttctagggaatgtctaatttctcaaagcctgcaaggtacatcttcatggaaattcagaagattgatagcagttattatcctgaggtacttttt |
109 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11683935 |
attattcttctagggaatgtctaatttctcagagcctgcaaggtaaatcttcatggaaattcagaagattgatagcaattattatcctgaggtacttttt |
11683836 |
T |
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| Q |
110 |
gttgatcatagctcatgagcagatgatttggatata |
145 |
Q |
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| T |
11683835 |
gttgatcatagctcatgagcagatgatttggttata |
11683800 |
T |
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