View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21665_high_3 (Length: 444)

Name: NF21665_high_3
Description: NF21665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21665_high_3
NF21665_high_3
[»] chr4 (12 HSPs)
chr4 (7-432)||(7615429-7615854)
chr4 (11-428)||(7606419-7606854)
chr4 (7-339)||(7637246-7637578)
chr4 (7-331)||(7628800-7629124)
chr4 (14-336)||(7655748-7656070)
chr4 (355-432)||(7637612-7637689)
chr4 (355-432)||(7629166-7629243)
chr4 (14-87)||(7633577-7633650)
chr4 (356-432)||(7655634-7655710)
chr4 (142-237)||(7633664-7633759)
chr4 (140-223)||(8999255-8999337)
chr4 (184-223)||(39098047-39098086)
[»] chr7 (6 HSPs)
chr7 (7-432)||(8935598-8936041)
chr7 (11-339)||(8910770-8911098)
chr7 (11-110)||(8938714-8938813)
chr7 (355-428)||(8910667-8910736)
chr7 (14-87)||(8918977-8919050)
chr7 (142-279)||(8918826-8918963)
[»] chr3 (3 HSPs)
chr3 (14-290)||(40147022-40147298)
chr3 (17-223)||(8102650-8102856)
chr3 (356-405)||(40146910-40146959)
[»] chr6 (2 HSPs)
chr6 (17-223)||(6500675-6500882)
chr6 (140-219)||(11969244-11969323)
[»] chr8 (1 HSPs)
chr8 (356-429)||(15190684-15190757)


Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 432
Target Start/End: Original strand, 7615429 - 7615854
Alignment:
Q  7 acaaagtccaccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaac 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  7615429 acaaagtccaccttcttccaccaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatattctggtaatggtggaactaac 7615528  T
Q  107 cttggtcgaactcctatcacaactatattaaatacttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgctt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7615529 cttggtcgaactcctatcacaactatattaaatacttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcactt 7615628  T
Q  207 gtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaatatcctatttgataaaca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615629 gtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaatatcctatttgataaaca 7615728  T
Q  307 aagtttttcctcattagacgacgaaaaactcaattcatcaccgtaaacgaaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615729 aagtttttcctcattagacgacgaaaaactcaattcatcaccgtaaacgaaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagt 7615828  T
Q  407 gttgggggtttagatatttgatgatg 432  Q
    ||||||||||||||||||||||||||    
T  7615829 gttgggggtttagatatttgatgatg 7615854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 7606419 - 7606854
Alignment:
Q  11 agtccaccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaaccttg 110  Q
    ||||||||||| ||||||||||| |||||||||||||| || |||||||||||||  |  ||||||||||||||||||||||| |||||||| |||||||    
T  7606419 agtccaccttcgtccaacaactcaccaactttcattttgactatacaacttataatcgagtttccaaaataatcttctggtaatggtggaacaaaccttg 7606518  T
Q  111 gtcgaactcctatcacaactatattaaatacttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgcttgtag 210  Q
    ||| |||||||||||| |||| |||| |||||||||||||| ||||||||| | ||||||| |  |||||||||||||||||||||||||||||||||||    
T  7606519 gtccaactcctatcacgactagattatatacttcttcttgtaggtcaaattgtttggaacggacgacagagcaccaaaggtgagttaaaagcgcttgtag 7606618  T
Q  211 agaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaatatcctatttgataaacaaagt 310  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||| |||||||  |||||||| |||||||||||||||| |||||||||||||||||||    
T  7606619 agaagttattttgatggtaccaacctcttcattgattttcgatttcagttgtatgattttctcctttgtgaaatgaaataacctatttgataaacaaagt 7606718  T
Q  311 ttttcctcattagacgacgaaaaactcaattcatcaccgt------------------aaacgaaaggaaatcgtatgggctgttgaacaccatttggaa 392  Q
    ||||||||||||||||| ||||||||||| ||||||| ||                   |  ||||||||||||||||||  |||||| |||||||||||    
T  7606719 ttttcctcattagacgatgaaaaactcaactcatcacagtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttggaa 7606818  T
Q  393 accaacgctctagtgttgggggtttagatatttgat 428  Q
    ||||||||||||||||||||||||| ||||||||||    
T  7606819 accaacgctctagtgttgggggtttggatatttgat 7606854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 339
Target Start/End: Original strand, 7637246 - 7637578
Alignment:
Q  7 acaaagtccaccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaac 106  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637246 acaaagtccaccttcctccaacaattccccagctttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaac 7637345  T
Q  107 cttggtcgaactcctatcacaactatattaaatacttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgctt 206  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | || ||||  ||||| ||||||||| |||||||||||| ||||    
T  7637346 cttggtcgaactcctatcacgactctattaaatacttcttcttgtgggtcaaattgtttgaaacgggtcacatagcaccaaacgtgagttaaaagtgctt 7637445  T
Q  207 gtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaatatcctatttgataaaca 306  Q
    ||||||||||||||||| |||| || ||||| || |||||||||||||| | |||||  |||||||| |||||||||||||||| |||||||||||||||    
T  7637446 gtagagaagatattttggtggtgccgatctcttcgttgattttcgatttcaattgtaggattttctcctttgtgaaatgaaataacctatttgataaaca 7637545  T
Q  307 aagtttttcctcattagacgacgaaaaactcaa 339  Q
    |  ||||||||||||| |||| |||||||||||    
T  7637546 atatttttcctcattaaacgatgaaaaactcaa 7637578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 7628800 - 7629124
Alignment:
Q  7 acaaagtccaccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaac 106  Q
    ||||||||||||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | |    
T  7628800 acaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaatggtggaataagc 7628899  T
Q  107 cttggtcgaactcctatcacaactatattaaatacttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgctt 206  Q
    ||||||| |||||||||| | ||| |||||||||||||||||||||||||||||| | || ||||  ||||| |||||||||  ||||||| ||||||||    
T  7628900 cttggtctaactcctatcgcgactctattaaatacttcttcttgtgggtcaaattgtttgaaacgggtcacatagcaccaaacatgagttagaagcgctt 7628999  T
Q  207 gtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaatatcctatttgataaaca 306  Q
    |||||||||||||||||||| |||||||||| |  |||||||| ||||| ||||| || |||||||| ||||| || || ||||  ||||||||||||||    
T  7629000 gtagagaagatattttgatgttaccaatctctttgttgatttttgatttcagttgcacgattttctcctttgtaaagtggaataatctatttgataaaca 7629099  T
Q  307 aagtttttcctcattagacgacgaa 331  Q
    ||||||||| |||||||| ||||||    
T  7629100 aagtttttcatcattagatgacgaa 7629124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 14 - 336
Target Start/End: Complemental strand, 7656070 - 7655748
Alignment:
Q  14 ccaccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaaccttggtc 113  Q
    |||||||| |||||||||||||||||||||||||||| |   |||| |||||  || ||||||||||||||||| || || |||||||| |  |||||||    
T  7656070 ccaccttcctccaacaactccccaactttcattttaaacccgcaacctataatcgcgtttccaaaataatcttccggcaatggtggaacaagtcttggtc 7655971  T
Q  114 gaactcctatcacaactatattaaatacttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgcttgtagaga 213  Q
     ||||||||| |  |   ||||||   | ||||||||||| ||||  | | ||||||| ||||| || |||||||| |||||||||||||||||||||||    
T  7655970 taactcctattatgaacgtattaagcgcatcttcttgtggatcaagatgtttggaacgaatcactgaacaccaaagatgagttaaaagcgcttgtagaga 7655871  T
Q  214 agatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaatatcctatttgataaacaaagtttt 313  Q
    |||||||||  ||||| |||||||  |||||| ||||||||| ||||| |  |||||||  ||||| || ||||||||||| | ||||| | | ||||||    
T  7655870 agatatttttttggtatcaatctctgcattgactttcgatttcagttgcatgattttcttctttgtaaagtgaaatatcctctctgatagaaagagtttt 7655771  T
Q  314 tcctcattagacgacgaaaaact 336  Q
    || |||| ||| |||||||||||    
T  7655770 tcgtcatcagaagacgaaaaact 7655748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 355 - 432
Target Start/End: Original strand, 7637612 - 7637689
Alignment:
Q  355 gaaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatg 432  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637612 gaaaggaaatcgtataggccgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatg 7637689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 355 - 432
Target Start/End: Original strand, 7629166 - 7629243
Alignment:
Q  355 gaaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatg 432  Q
    ||||||||||||||||||  |||||| |||||||||||||||||| ||   |||||| ||||||||||||||||||||    
T  7629166 gaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgttcagatgttggaggtttagatatttgatgatg 7629243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 7633577 - 7633650
Alignment:
Q  14 ccaccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttc 87  Q
    ||||| || ||||| |||||||||||||| ||||||||| |||||| ||||| ||||||||||||| |||||||    
T  7633577 ccaccctcctccaataactccccaactttaattttaaccttacaacatataactgcatttccaaaacaatcttc 7633650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 356 - 432
Target Start/End: Complemental strand, 7655710 - 7655634
Alignment:
Q  356 aaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatg 432  Q
    |||||||||||||| ||  ||||||  |||||||||||||||||||| || |||||||  |||||||||||||||||    
T  7655710 aaaggaaatcgtataggtcgttgaattccatttggaaaccaacgctccagcgttggggagttagatatttgatgatg 7655634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 7633664 - 7633759
Alignment:
Q  142 ttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctc 237  Q
    ||||||||||| ||||| || | |||||||  |||||  |||||||||||||| ||||||||| | |||  || ||||||||| ||||||||||||    
T  7633664 ttcttcttgtgcgtcaagttgtttggaacgggtcacatggcaccaaaggtgagctaaaagcgcatataggaaatatattttgacggtaccaatctc 7633759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 8999255 - 8999337
Alignment:
Q  140 acttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttg 223  Q
    |||||||||||| |||||| || | | ||||| |||||||||| ||||||||||| |  ||||||||| || ||||||||||||    
T  8999255 acttcttcttgtaggtcaagttgttttgaacggatcacagagcgccaaaggtgag-tgtaagcgcttgcagggaagatattttg 8999337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 39098047 - 39098086
Alignment:
Q  184 ccaaaggtgagttaaaagcgcttgtagagaagatattttg 223  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  39098047 ccaaaggtgagttaaaagtgcttgtaaagaagatattttg 39098086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 7 - 432
Target Start/End: Complemental strand, 8936041 - 8935598
Alignment:
Q  7 acaaagtccaccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaac 106  Q
    ||||||||||||||| | ||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  8936041 acaaagtccaccttccttcaacaactccccagctgtcattttaaccatacaacttataactgcatttccaaaataatattctggtaatggtggaactaac 8935942  T
Q  107 cttggtcgaactcctatcacaactatattaaatacttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgctt 206  Q
    ||||||| |||||||||||| | | ||||||  ||||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||| ||||||    
T  8935941 cttggtccaactcctatcacgattctattaaccacttcttcttgtgggtcaatttttttggaacacatcacacagcaccaaaggtgagttaaaggcgctt 8935842  T
Q  207 gtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaatatcctatttgataaaca 306  Q
    ||||||||||||||||||||||||||||||| |||||||||||  |||| || ||||| |||||||||||||||||||||||||| |||||||| |||||    
T  8935841 gtagagaagatattttgatggtaccaatctcttcattgatttttaatttcagctgtacgattttctcttttgtgaaatgaaatattctatttgagaaaca 8935742  T
Q  307 aagtttttcctcattagacgacgaaaaactcaattcatcaccgt------------------aaacgaaaggaaatcgtatgggctgttgaacaccattt 388  Q
    ||||||||| ||||   ||||| ||||||||||  |||||  ||                  ||  ||||||||||||||| ||| ||||||||||||      
T  8935741 aagtttttcatcatctaacgacaaaaaactcaacccatcagagtgattcttttgttgctccaaagtgaaaggaaatcgtattggccgttgaacaccatcc 8935642  T
Q  389 ggaaaccaacgctctagtgttgggggtttagatatttgatgatg 432  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    
T  8935641 ggaaaccaacgttctagtgttggaggtttagatatttgatgatg 8935598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 8911098 - 8910770
Alignment:
Q  11 agtccaccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaaccttg 110  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| ||||||||||||||||    
T  8911098 agtccaccttcctccaacagctccccaactttcattttaaccatacaacttacaattgcatttccaaaataatattctggtaatggtggaactaaccttg 8910999  T
Q  111 gtcgaactcctatcacaactatattaaatacttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgcttgtag 210  Q
    ||| |||||||||||  ||| ||||||||||||| |||||||| ||||||| | || |||  |||||| || |||| | |||||||||||| ||||||||    
T  8910998 gtccaactcctatcatgactctattaaatacttcatcttgtggatcaaattgtttgaaacatatcacataggaccagatgtgagttaaaagtgcttgtag 8910899  T
Q  211 agaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaatatcctatttgataaacaaagt 310  Q
    ||||||||||||| |||| || ||||| || |||||||||||||| | |||||  |||||||| |||||||||||||||| |||||||||||||||| ||    
T  8910898 agaagatattttggtggtgccgatctcttcgttgattttcgatttcaattgtaggattttctcctttgtgaaatgaaataacctatttgataaacaatgt 8910799  T
Q  311 ttttcctcattagacgacgaaaaactcaa 339  Q
    ||||||||||||  ||| |||||||||||    
T  8910798 ttttcctcattaagcgatgaaaaactcaa 8910770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 8938813 - 8938714
Alignment:
Q  11 agtccaccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaaccttg 110  Q
    ||||||||||| ||||||||||| |||||||||||||| || |||||||||||||  |  ||||||||||||||||||||||| |||||||| |||||||    
T  8938813 agtccaccttcgtccaacaactcaccaactttcattttgactatacaacttataatcgagtttccaaaataatcttctggtaatggtggaacaaaccttg 8938714  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 355 - 428
Target Start/End: Complemental strand, 8910736 - 8910667
Alignment:
Q  355 gaaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgat 428  Q
    ||||||||||||||| ||| |||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  8910736 gaaaggaaatcgtataggccgttgaac----tttggaaaccaacgctctagtgttgggggtttagatatttgat 8910667  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 8919050 - 8918977
Alignment:
Q  14 ccaccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttc 87  Q
    ||||| || ||||| |||||||||||||| |||||||||  ||||| ||||| ||||||||||||| |||||||    
T  8919050 ccaccctcctccaataactccccaactttaattttaacctcacaacatataactgcatttccaaaacaatcttc 8918977  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 8918963 - 8918826
Alignment:
Q  142 ttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatca 241  Q
    |||||||| || ||||| || | |||||||  |||||  |||||||||||||| ||||||||| | |||  || ||||||||| ||||||||||||        
T  8918963 ttcttcttatgcgtcaagttgtttggaacgggtcacatggcaccaaaggtgagctaaaagcgcatataggaaatatattttgacggtaccaatctctgtg 8918864  T
Q  242 ttgattttcgattttagttgtacaattttctcttttgt 279  Q
    |||| ||| ||||| |||||||  |||||||| |||||    
T  8918863 ttgacttttgatttcagttgtaagattttctcctttgt 8918826  T

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Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 40147298 - 40147022
Alignment:
Q  14 ccaccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaaccttggtc 113  Q
    ||||| |||||||||||||| ||  |||||||| ||||| |||||  |  ||  |||||||||||||||||||| || || |||||||| ||||||| ||    
T  40147298 ccaccatcttccaacaactctcccgctttcattgtaaccctacaaacttcaacagcatttccaaaataatcttcaggcaatggtggaacaaaccttgatc 40147199  T
Q  114 gaactcctatcacaactatattaaatacttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgcttgtagaga 213  Q
     | |||||||| | || |||| | | |||||||| ||||||||||||| | ||||||| |||||||||| |||||| || || ||||| | ||| || ||    
T  40147198 tagctcctatcgcgaccatataataaacttcttcgtgtgggtcaaattgtttggaacggatcacagagcgccaaagatgtgtaaaaagtgattggaggga 40147099  T
Q  214 agatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaata 290  Q
     ||||||||| |||||||||||||    |||  |||| |||| |||||  | |||||||| ||||||||||| ||||    
T  40147098 tgatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttctcctttgtgaaatggaata 40147022  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 8102650 - 8102856
Alignment:
Q  17 ccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaaccttggtcgaa 116  Q
    ||||||||||||||||||||||||||||||  ||||||| ||  || ||  |||||||||||||||||||| || || |||||||| |||||| ||| ||    
T  8102650 ccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatggtggaacaaacctttgtctaa 8102749  T
Q  117 ctcctatcacaactatattaaatacttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgcttgtagagaaga 216  Q
    |||||||| | || |||  | || | |  ||||||||||| ||||    |||||| ||||| |||||||||||||| |  ||||| ||||| || |||||    
T  8102750 ctcctatcccgaccataaaatatgcgttctcttgtgggtctaattggtcggaacggatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaaga 8102849  T
Q  217 tattttg 223  Q
    |||||||    
T  8102850 tattttg 8102856  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 40146959 - 40146910
Alignment:
Q  356 aaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctag 405  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||| |||||    
T  40146959 aaaggaaatcgtatgggatgttgaataccacttggaaaccaacgttctag 40146910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 6500675 - 6500882
Alignment:
Q  17 ccttcttccaacaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaaccttggtcgaa 116  Q
    ||||||||||||||||| ||| |||||||  ||||| |||||  ||| |  ||||||||||||||||||| ||||||  ||||||| | |||||||| ||    
T  6500675 ccttcttccaacaactcaccagctttcatgctaaccctacaatctatcacagcatttccaaaataatcttgtggtaatagtggaacaagccttggtctaa 6500774  T
Q  117 ctcctatcacaactatattaaatacttcttctt-gtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgcttgtagagaag 215  Q
    | ||||| |  |  |||||  | |||||||||| ||||||||| |||| ||||| | |||||||| | ||||| |||||||||||| |||||||  || |    
T  6500775 cgcctattaggaacatattgtaaacttcttcttggtgggtcaagttttttggaatggatcacagaacgccaaatgtgagttaaaagagcttgtaaggatg 6500874  T
Q  216 atattttg 223  Q
    ||||||||    
T  6500875 atattttg 6500882  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 11969244 - 11969323
Alignment:
Q  140 acttcttcttgtgggtcaaattttatggaacgcatcacagagcaccaaaggtgagttaaaagcgcttgtagagaagatat 219  Q
    ||||||||||||||||||||||   | || || | |||||||| ||| |||||||| |||||||||||||  ||||||||    
T  11969244 acttcttcttgtgggtcaaattgatttgagcggaccacagagcgccagaggtgagtgaaaagcgcttgtaaggaagatat 11969323  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 15190757 - 15190684
Alignment:
Q  356 aaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatg 429  Q
    |||||||||||||||||  ||||||  |||||||||||  |||| || |||||||| |||  ||||||||||||    
T  15190757 aaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtacagatatttgatg 15190684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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