View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21665_high_4 (Length: 371)
Name: NF21665_high_4
Description: NF21665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21665_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 200 - 361
Target Start/End: Complemental strand, 37483804 - 37483645
Alignment:
| Q |
200 |
gtattcggttcctgcaaattcaaaaactcttgttttaaatttgcagggactgagttgaaacnnnnnnncttacagggactaaaaccaaaacactctataa |
299 |
Q |
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| T |
37483804 |
gtattcggttcctgcaaattcaaaaactcttgttttaaatttgcagggactgagttgaaacaaaaaaacttacagggactaaaaccaaaacactctataa |
37483705 |
T |
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| Q |
300 |
ttgcgcagagacttaaattgtatttgtttttggtgtttgactgatagagtttatggtctgtg |
361 |
Q |
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| T |
37483704 |
tt--gcagagacttaaattgtatttgtttttggtgtttgattgatagagtttatggtctgtg |
37483645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 37483955 - 37483843
Alignment:
| Q |
48 |
aatagtcctcacttacgcaaatctggaagtagacctgttgtttatgatcttggtattatttaagtttccgcaattatagtgttattcatgattctagttt |
147 |
Q |
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| T |
37483955 |
aatagtcctcacttacgcaaatctggaagtagacctgttgtttatgatcttggtattatttaagtttccg-aattatagtgttattcatgattctagttt |
37483857 |
T |
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| Q |
148 |
ccgcaattatagtg |
161 |
Q |
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| T |
37483856 |
ccgcaattatagtg |
37483843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5434201 - 5434152
Alignment:
| Q |
1 |
aatatatcatgtgagaacccttcataaccacacaaagagatatatccaat |
50 |
Q |
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| T |
5434201 |
aataaatcgtgtgagaatccttcataaccgcacaaagagatatatccaat |
5434152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5176905 - 5176856
Alignment:
| Q |
1 |
aatatatcatgtgagaacccttcataaccacacaaagagatatatccaat |
50 |
Q |
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| T |
5176905 |
aatatatcacgtgagaatccttcatagccgcacaaagagatgtatccaat |
5176856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5278732 - 5278683
Alignment:
| Q |
1 |
aatatatcatgtgagaacccttcataaccacacaaagagatatatccaat |
50 |
Q |
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| T |
5278732 |
aatatatcacgtgagaatccttcatagccgcacaaagagatgtatccaat |
5278683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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