View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21665_high_6 (Length: 356)
Name: NF21665_high_6
Description: NF21665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21665_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 31565718 - 31565883
Alignment:
| Q |
96 |
ttcatattcataaagagcttacagaaggtgccaattatgagtgt--taatgaatatggtagaatgtttcaatttatgggtataaaaaataacacaattat |
193 |
Q |
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| T |
31565718 |
ttcatattcataaagagcttacaaaaggtgccaattatgagtgtgttaatgaatatggtagaatgtttcaatttatggatataaaaaataacacaattat |
31565817 |
T |
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| Q |
194 |
tggcaccttttcttcatctttgggaatgaaatgacgaaagtgcccttacttttcctcaacccctta |
259 |
Q |
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| T |
31565818 |
tggcaccttttcttcatctttgggaatgaaatgacgaaagtgcccttacttttcctcaacccctta |
31565883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 31565922 - 31566012
Alignment:
| Q |
256 |
cttatcaactttcttttgctcttcaacctcaaaacccataaccatcataaattccaacaacaactgaagctgtttctttctgaggtctctg |
346 |
Q |
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| T |
31565922 |
cttatcaactttcttttgctcttcaacctcaaaacccataaccatcataaattccaacaacaactgaagctgtttctttctgaggtttctg |
31566012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31565651 - 31565719
Alignment:
| Q |
1 |
agttttgcttccgtgttcatagagcttgattgtaagcaagtggataaatggctccttttgtaagctctt |
69 |
Q |
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| T |
31565651 |
agttttgcttccgtgttcatagagcttgattgtaagcaagtggataaatggcaccttttgtaagctctt |
31565719 |
T |
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