View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21665_high_9 (Length: 334)
Name: NF21665_high_9
Description: NF21665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21665_high_9 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 33 - 334
Target Start/End: Complemental strand, 20206004 - 20205703
Alignment:
| Q |
33 |
catacagtcagtggtataaatccttctgagtccgtctatggatcgttcatgtgtagaggtgacataccgtctctgctatgtcaggactgcatagttaaag |
132 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20206004 |
catacagtcactagtataaatccttctgagtccgtctatggatcgttcatgtgtagaggtgacataccgtctctgctatgtcaggactgcatagttaaag |
20205905 |
T |
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| Q |
133 |
caaccaatcagctatcctcagcgtgctctttgtccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttccac |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20205904 |
caaccaatcagctatcctcagcgtgctctttgtccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttccac |
20205805 |
T |
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| Q |
233 |
gatcgatatgatgccaggttttcactggtgcaataccgccaatgtcacaaacacgaagagctttgtgtctttattgtttacaaccatgaatcgaactgta |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20205804 |
gatcgatatgatgccaggttttcactggtgcaataccgccaatgtcacaaacacgaagagctttgtgtctttattgtttacaaccatgaatcgaactgta |
20205705 |
T |
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| Q |
333 |
ga |
334 |
Q |
| |
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|| |
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| T |
20205704 |
ga |
20205703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 33 - 334
Target Start/End: Complemental strand, 22100027 - 22099726
Alignment:
| Q |
33 |
catacagtcagtggtataaatccttctgagtccgtctatggatcgttcatgtgtagaggtgacataccgtctctgctatgtcaggactgcatagttaaag |
132 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22100027 |
catacagtcactagtataaatccttctgagtccgtctatggatcgttcatgtgtagaggtgacataccgtctctgctatgtcaggactgcatagttaaag |
22099928 |
T |
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| Q |
133 |
caaccaatcagctatcctcagcgtgctctttgtccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttccac |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22099927 |
caaccaatcagctatcctcagcgtgctctttgtccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttccac |
22099828 |
T |
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| Q |
233 |
gatcgatatgatgccaggttttcactggtgcaataccgccaatgtcacaaacacgaagagctttgtgtctttattgtttacaaccatgaatcgaactgta |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22099827 |
gatcgatatgatgccaggttttcactggtgcaataccgccaatgtcacaaacacgaagagctttgtgtctttattgtttacaaccatgaatcgaactgta |
22099728 |
T |
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| Q |
333 |
ga |
334 |
Q |
| |
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|| |
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| T |
22099727 |
ga |
22099726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 63 - 330
Target Start/End: Complemental strand, 21972535 - 21972268
Alignment:
| Q |
63 |
tccgtctatggatcgttcatgtgtagaggtgacataccgtctctgctatgtcaggactgcatagttaaagcaaccaatcagctatcctcagcgtgctctt |
162 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
21972535 |
tccgtctatggattgttcatgtgtagaggtgacataccctctcatctatgtcatgactgcatagttaaggcaaccaatcagctatcctcagagtgctctt |
21972436 |
T |
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| Q |
163 |
tgtccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttccacgatcgatatgatgccaggttttcactggtg |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21972435 |
tgtccaaacaagctgtgatttggtacggcgagtgcatggttcgattctctgacaactctttcttttccacgatcgatatgatgccaggttttcactggtg |
21972336 |
T |
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| Q |
263 |
caataccgccaatgtcacaaacacgaagagctttgtgtctttattgtttacaaccatgaatcgaactg |
330 |
Q |
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||||||||| | || ||||||||| ||||| ||||||||||||||| |||||||||||||||||| |
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| T |
21972335 |
caataccgctgaaatcttaaacacgaaaagcttcgtgtctttattgttttcaaccatgaatcgaactg |
21972268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 20128259 - 20128192
Alignment:
| Q |
165 |
tccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttccac |
232 |
Q |
| |
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||||||| |||||| |||||||||| |||||||||||||||||||| |||| |||||||||||||| |
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| T |
20128259 |
tccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccac |
20128192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 22204611 - 22204678
Alignment:
| Q |
165 |
tccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttccac |
232 |
Q |
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||||||| |||||| |||||||||| |||||||||||||||||||| |||| |||||||||||||| |
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| T |
22204611 |
tccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccac |
22204678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 47634870 - 47634922
Alignment:
| Q |
156 |
tgctctttgtccaaacaagctgtgatttggtacggcgagtgcatggttcgata |
208 |
Q |
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||||| || |||||||||||||| || ||||||| |||||||||||||||||| |
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| T |
47634870 |
tgctccttatccaaacaagctgtaatctggtacgacgagtgcatggttcgata |
47634922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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