View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21666_high_1 (Length: 243)
Name: NF21666_high_1
Description: NF21666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21666_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 17116283 - 17116050
Alignment:
| Q |
1 |
tcatcatctttctccacaatcattattctccattatgagaactccccaacaatagttgttgattggaaatagcaacccaaagctccattggctcttcatc |
100 |
Q |
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| T |
17116283 |
tcatcatctttctcctcaatcattattctcccttatgagaactccccaacaatagttgttgattggaaacatcaacccaaagctccattggctcttcatc |
17116184 |
T |
|
| Q |
101 |
ttcacaaatacaaagaattagaaattttaccaatccacacatatatcgttgaaggaacatgaacaataaaaacaatacgagaatcaagagctagcagcct |
200 |
Q |
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| T |
17116183 |
ttcacaaatacaaagaattagaaattttaccaatccacacatatatcgttgaaggaacatgaacaataaaaacaatacgagaatcaagagctagcagcct |
17116084 |
T |
|
| Q |
201 |
agcaatatagcctccattaggtaccaaatgatga |
234 |
Q |
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| T |
17116083 |
agcaatatagcctccattaggtaccaaatgatga |
17116050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 50071532 - 50071764
Alignment:
| Q |
1 |
tcatcatctttctccacaatcattattctccattatgagaactccccaacaatagttgttgattggaaatagcaacccaaagctccattggctcttcatc |
100 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50071532 |
tcatcatctttctccaca-tcattattctcccttatgagaactccccaacaatagttgttgattggaaatagcaacccaaagctccattggctcttcatc |
50071630 |
T |
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| Q |
101 |
ttcacaaatacaaagaattagaaattttaccaatccacacatatatcgttgaaggaacatgaacaataaaaacaatacgagaatcaagagctagcagcct |
200 |
Q |
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| T |
50071631 |
ttcacaaatacaaagaattagaaattttaccaatccacacatatatcgttgaaggaacatgaacaataaaaacaatacgagaatcaagagctagcagcct |
50071730 |
T |
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| Q |
201 |
agcaatatagcctccattaggtaccaaatgatga |
234 |
Q |
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| T |
50071731 |
agcaatatatccttcattaggtaccgaatgatga |
50071764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 37347871 - 37347785
Alignment:
| Q |
33 |
ttatgagaactccccaacaatagttgttgattggaaatagcaacccaaagctccattggctcttcatcttcacaaatacaaagaatt |
119 |
Q |
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|||| ||||||||||||||||| ||| || || |||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
37347871 |
ttatcagaactccccaacaataattgctggttagaaagagcaacccaaaactccattggctcttcatcttcacaaatgcaaagaatt |
37347785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 48621698 - 48621612
Alignment:
| Q |
33 |
ttatgagaactccccaacaatagttgttgattggaaatagcaacccaaagctccattggctcttcatcttcacaaatacaaagaatt |
119 |
Q |
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|||| |||| |||| |||||| |||| || |||| || ||||||| ||| |||||||||||||| |||||||||||| ||||||||| |
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| T |
48621698 |
ttatcagaattcccaaacaatggttgctggttggtaagagcaaccaaaaactccattggctcttgatcttcacaaatgcaaagaatt |
48621612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 39220504 - 39220435
Alignment:
| Q |
125 |
ttttaccaatccacacatatatcgttgaaggaacatgaacaataaaaacaatacgagaatcaagagctag |
194 |
Q |
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|||| |||||||||||||| || | ||||||||||||||||||||| || ||| |||||||| ||||| |
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| T |
39220504 |
ttttcccaatccacacatagatagcagaaggaacatgaacaataaaagcaccacgcgaatcaagtgctag |
39220435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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