View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21666_high_1_N (Length: 620)

Name: NF21666_high_1_N
Description: NF21666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21666_high_1_N
NF21666_high_1_N
[»] chr1 (5 HSPs)
chr1 (27-602)||(12637221-12637796)
chr1 (27-232)||(15885534-15885739)
chr1 (27-218)||(12610128-12610319)
chr1 (438-592)||(12610626-12610786)
chr1 (438-602)||(15885252-15885422)
[»] scaffold0059 (2 HSPs)
scaffold0059 (27-232)||(62376-62581)
scaffold0059 (438-590)||(62762-62917)
[»] chr6 (1 HSPs)
chr6 (56-232)||(21780065-21780241)
[»] chr3 (7 HSPs)
chr3 (130-232)||(23036496-23036598)
chr3 (41-235)||(23148995-23149189)
chr3 (41-228)||(23146157-23146344)
chr3 (130-235)||(23024598-23024703)
chr3 (27-232)||(23039264-23039469)
chr3 (118-235)||(23140360-23140477)
chr3 (119-232)||(23017377-23017490)
[»] scaffold0554 (1 HSPs)
scaffold0554 (130-232)||(6326-6428)


Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 27 - 602
Target Start/End: Original strand, 12637221 - 12637796
Alignment:
Q  27 gtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12637221 gtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagttcctttcttgttgaatatttttctcacttc 12637320  T
Q  127 atattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12637321 atattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatgatgtcc 12637420  T
Q  227 tgaaaaatatatcaggatatcaaaaaagactactaaagtctaaaagagataatttgatagcatcaatcgcaaggttttaaattgtggttgcgtcgcaatc 326  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||    
T  12637421 tgaaaaatatatcaggatttcaaaaaagactactaaagtctaaaagagataatttgttggcatcaatcacaaggttttaaattgtggttgcgtcgcaatc 12637520  T
Q  327 tttgatattgcaataatcaagaatctgaatcgtgattatatcgtgtttgctgatacaccaaaaaccttgatatgtcgcggcctatggaaaacattannnn 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||        
T  12637521 tttgatattgcaataatcaagaatctgaatcgtgattatatcgtgttttctaatacaccaaaaaccttgatatgtcgcggcctatggaaaacgttatttt 12637620  T
Q  427 nnncaaaaggcttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttga 526  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637621 tttcaaaaggcttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttga 12637720  T
Q  527 agaacatctaccagatcttcctctacttcaccttcttttgcttttgacttagcttctttatgttcattgatgatgt 602  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12637721 agaacatctaccagatcttcctctacttcgccttcttttgcttttgacttagcttctttatgttcattgatgatgt 12637796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 15885739 - 15885534
Alignment:
Q  27 gtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttc 126  Q
    |||||||||  ||||||||||| ||| ||||||||||   ||| ||||| |||||||| |||||||||  ||||||  ||||||| |||| ||| |||||    
T  15885739 gtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattccttttgtgttgaacatttctcttacttc 15885640  T
Q  127 atattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcc 226  Q
    || ||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||| ||    ||||| || ||||||||||||| |||||||    
T  15885639 atcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcaccaaacatgtcc 15885540  T
Q  227 tgaaaa 232  Q
    ||||||    
T  15885539 tgaaaa 15885534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 12610128 - 12610319
Alignment:
Q  27 gtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttc 126  Q
    |||||||||  ||||||||||| ||| |||| |||||   ||||||||||||| | |||||  |||||  ||||||| |||||||||| | ||| || ||    
T  12610128 gtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaatatatctcttacctc 12610227  T
Q  127 atattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaa 218  Q
    || ||||||||||||||||||||||  ||||||||| ||||||| ||||||||||||||| ||||  | |||||| ||||||||||||||||    
T  12610228 atcttgtgctttcttcatcactcttttatcccttaccaactctgacattgcccaaactatagtagaagctgatgtatcacctccagcaccaa 12610319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 438 - 592
Target Start/End: Original strand, 12610626 - 12610786
Alignment:
Q  438 ttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaacatctac 537  Q
    ||||||| |||||||||||||||| |||||||||||| |||||||| |||||||||||||   | |||||||||||||| |||||| ||||||| |||||    
T  12610626 ttattatccttaccaggattatagacttgatattgttatcagttaaacatatatcttggttgctgtcattaccaccttggaattttagaagaacgtctac 12610725  T
Q  538 cagatcttcctctacttcacc------ttcttttgcttttgacttagcttctttatgttca 592  Q
    ||||||||| ||| || ||||      ||| |||||||||||||| |||||||||||||||    
T  12610726 cagatcttcttcttctccaccttgactttcatttgcttttgactttgcttctttatgttca 12610786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 602
Target Start/End: Complemental strand, 15885422 - 15885252
Alignment:
Q  438 ttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaacatctac 537  Q
    ||||||| ||||| |||| || ||||||||| |||||||||||||||||||||||||  ||| ||||||| | || |||  ||||| ||||||| || ||    
T  15885422 ttattatccttactaggagtacagccttgatgttgttgtcagttaagcatatatctttttcattatcattgcgacgttggtattttagaagaacgtcaac 15885323  T
Q  538 cagatcttcctctacttc------accttcttttgcttttgacttagcttctttatgttcattgatgatgt 602  Q
    || |||||| ||| ||||       | ||||||||||||||| || ||||||||||||||| |||||||||    
T  15885322 caaatcttcttctgcttcttcttggcattcttttgcttttgaatttgcttctttatgttcaatgatgatgt 15885252  T

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Target: scaffold0059 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 62376 - 62581
Alignment:
Q  27 gtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttc 126  Q
    ||||||| || ||||||||||| | | ||||||  |||| ||||||||  ||| |  ||||| ||| |||||| ||| ||||| |||||| |||||||||    
T  62376 gtaacctcagggtctctttcacaattgacttcacgtatttgagttcatgcatacaactttcatcaaaagctcccttcatgttgtatatttctctcacttc 62475  T
Q  127 atattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcc 226  Q
    || ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |    | |||||| |||||||||||||||| |||||||    
T  62476 atcttgtgctttcttcatcactcttggatctcttaccaactctgccattgcccaaactacgctcaaagctgatgtatcacctccagcaccaaacatgtcc 62575  T
Q  227 tgaaaa 232  Q
    ||||||    
T  62576 tgaaaa 62581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 438 - 590
Target Start/End: Original strand, 62762 - 62917
Alignment:
Q  438 ttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaacatctac 537  Q
    ||||||||||||||| || ||||||||| ||||||||||  || ||| |||||||||||||  | |||| |||||| ||||| ||| ||||||| |||||    
T  62762 ttattatacttaccaagagtatagccttaatattgttgttggtcaaggatatatcttggtcgctgtcatcaccaccctgaaactttagaagaacgtctac 62861  T
Q  538 cagatcttcctctac---ttcaccttcttttgcttttgacttagcttctttatgtt 590  Q
    |||||||||  || |   ||  ||||||||| ||||| |||| |||||||||||||    
T  62862 cagatcttctgcttcagtttgtccttctttttcttttaactttgcttctttatgtt 62917  T

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Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 21780065 - 21780241
Alignment:
Q  56 ttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggat 155  Q
    |||||||| | ||||||||| ||  | |||||| ||||   ||||||| | ||||| | || ||||||||||| ||||||||||||||| | ||||||||    
T  21780065 ttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacttctctcacttcatcttgtgctttcttcattattcttggat 21780164  T
Q  156 cccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctgaaaa 232  Q
    ||||||| |  ||| ||||||||||| |||||||  | | |||||| |||||||||||||||| |||||||||||||    
T  21780165 cccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaa 21780241  T

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Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 23036496 - 23036598
Alignment:
Q  130 ttgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctga 229  Q
    ||||||||||||||| | |||||||| |||||| |  ||||||||||||||| |||||||  | | |||||| ||||||||||||||||  |||||||||    
T  23036496 ttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctga 23036595  T
Q  230 aaa 232  Q
    |||    
T  23036596 aaa 23036598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 23148995 - 23149189
Alignment:
Q  41 tctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttct 140  Q
    ||||| || ||||| |||||||| | ||||||||| ||  | |||||| ||||   ||||||| | ||||| |  | |||||| |||| |||||||||||    
T  23148995 tctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacctttcctttcattttgaaaacctctctcacctcatcttgtgctttct 23149094  T
Q  141 tcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctgaaaaata 235  Q
    |||| | |||||||||| |||| | |||| ||||||||||| |||||||  | | |||||| || |||||||||||||  |||||||||| ||||    
T  23149095 tcattattcttggatcctttaccatctctaccattgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaaatgtcctgaacaata 23149189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 23146157 - 23146344
Alignment:
Q  41 tctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttct 140  Q
    ||||| || ||||| |||||||| | ||||||||| ||  | |||||| ||||   ||||||| | ||||| |  | |||||| |||| |||||||||||    
T  23146157 tctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgtgctttct 23146256  T
Q  141 tcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctg 228  Q
    |||| | |||||||||| |||| || ||| ||||||||||| |||||||  | | |||||| |||||||||||| |||  ||||||||    
T  23146257 tcatgattcttggatcctttaccaattctaccattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctg 23146344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 23024598 - 23024703
Alignment:
Q  130 ttgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctga 229  Q
    ||||||||||||||| | |||||||| | |||| |  ||||||||||||||| |||||||  | | |||||| ||||||||||||||||  |||||||||    
T  23024598 ttgtgctttcttcattattcttggattctttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctga 23024697  T
Q  230 aaaata 235  Q
    | ||||    
T  23024698 acaata 23024703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 23039264 - 23039469
Alignment:
Q  27 gtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttc 126  Q
    ||||||| || || ||||| || ||| |||||||||| | ||||||||| ||  | |||||| ||||   ||||||| | ||||| |  | |||||| ||    
T  23039264 gtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctc 23039363  T
Q  127 atattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcc 226  Q
    || ||| ||||||||||| | ||||||||||||||  |  ||| ||||||||||  |||||||  | | |||||| ||||||||||||||||  | ||||    
T  23039364 atcttgcgctttcttcattattcttggatcccttatcatttctaccattgcccagtctatggtgcttgctgatgtctcacctccagcaccaaaaacgtcc 23039463  T
Q  227 tgaaaa 232  Q
    ||||||    
T  23039464 tgaaaa 23039469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 118 - 235
Target Start/End: Original strand, 23140360 - 23140477
Alignment:
Q  118 tctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcacca 217  Q
    |||||| |||| |||  |||||||||| | ||||||||||||||  |  ||| ||||||||||| |||||||  | | |||||| |||||||||||||||    
T  23140360 tctcacctcatcttgcactttcttcattattcttggatcccttatcatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcacca 23140459  T
Q  218 atcatgtcctgaaaaata 235  Q
    |  |||||||||| ||||    
T  23140460 aaaatgtcctgaacaata 23140477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 23017377 - 23017490
Alignment:
Q  119 ctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaa 218  Q
    |||||||||| ||||||||||||||| | |||||||| |||||  |  |||  |||||||||| || ||||  | | |||||| ||||||||| |||| |    
T  23017377 ctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctgtggtgcttgctgatgtctcacctccaccaccga 23017476  T
Q  219 tcatgtcctgaaaa 232  Q
      ||||||||||||    
T  23017477 aaatgtcctgaaaa 23017490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 6428 - 6326
Alignment:
Q  130 ttgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctga 229  Q
    |||||||||| |||| | |||||| |||||||  |  ||||||||||||||| ||||||| || | |||||| ||||||||||||||||  ||||||| |    
T  6428 ttgtgctttcatcattattcttggctcccttatcatttctgccattgcccaatctatggtggttgctgatgtatcacctccagcaccaaaaatgtcctaa 6329  T
Q  230 aaa 232  Q
    |||    
T  6328 aaa 6326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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