View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21666_high_3 (Length: 340)
Name: NF21666_high_3
Description: NF21666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21666_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 340
Target Start/End: Original strand, 15636383 - 15636716
Alignment:
| Q |
7 |
gcaccacagattctatcaacatattggactttcgccaaccatccggtgttggtcttaagataccaaaacatggtggtgtcaatgtacaatctattttctc |
106 |
Q |
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| T |
15636383 |
gcaccacagattctatcaacatattggactttcgccaaccatccggtgttggtcttaagataccaaaacatggtggtgtcaatgtacaatctattttctc |
15636482 |
T |
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| Q |
107 |
tcgcggcgattctgtcttccttggatgcaccgcttccacttcaatggggaaaagacagtcatcatcgctgatacaacaattttcgttgcggaaacaagaa |
206 |
Q |
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| T |
15636483 |
tcgcggcgattctgtcttctttggatgcaccgcttccactacaatggggaaaagacagtcatcatcgctaatacaacaattttcgttgcggaaacaagaa |
15636582 |
T |
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| Q |
207 |
ctattcaacacctatacttttccagaatccaatgcacactcacattacgcagcagtttcacaagtttggggtaattctgactttgtcatgggtgtgtgcg |
306 |
Q |
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| T |
15636583 |
ctattcaacacctatacttttccagaatccaatgcacactcacattacgcagcagtttcacaagtttggggtaattctgactttgtcatgggtgtgtgcg |
15636682 |
T |
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| Q |
307 |
gtttaggactatatgtgtttgacgcaatgaaaga |
340 |
Q |
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| T |
15636683 |
gtttaggactatatgtgtttgacgcaatgaaaga |
15636716 |
T |
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