View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21667_high_12 (Length: 347)
Name: NF21667_high_12
Description: NF21667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21667_high_12 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 347
Target Start/End: Complemental strand, 18332674 - 18332356
Alignment:
| Q |
23 |
atcatcatattctttaaaaaagattctcaaacaaaaaagaaaggtgattattatattttggattagttactgatttgggtctgatagacccggnnnnnnn |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18332674 |
atcatcatattctttaaaaaagattctcaaacaaaaaagaaaggtgattattatattttggattagttactgattttggtctgatagacccggtatattt |
18332575 |
T |
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| Q |
123 |
nnnnnnnnnnnnnnnnnnctgcaatggaagatagatttcatatttatagtagagtagagccgagccgtatgctatataaaagagatgcctgtacggcttt |
222 |
Q |
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| T |
18332574 |
tatatatattttatatttctgcaatggaagatagatttcatatttatagtagag-----ccgagccgtatgctatataaaagagatgcctgtacggcttt |
18332480 |
T |
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| Q |
223 |
aaattgaatttcttttttatatgccctccaagattaggaaaaactcctattctgttagactctcagctcagggtaatgatccatcaacctgctacttctt |
322 |
Q |
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| T |
18332479 |
aaattgaatttcttttttatatgccctccaagattagg-aaaactcctattctgttagactctcagctcagggtaatgatccatcaacctgctacttctt |
18332381 |
T |
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| Q |
323 |
tgtatgagggacaagcgggagaatg |
347 |
Q |
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| T |
18332380 |
tgtatgagggacaagtaggagaatg |
18332356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 182 - 347
Target Start/End: Complemental strand, 29800464 - 29800299
Alignment:
| Q |
182 |
ccgagccgtatgctatataaaagagatgcctgtacggctttaaattgaatttcttttttatatgccctccaagattaggaaaaactcctattctgttaga |
281 |
Q |
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| T |
29800464 |
ccgagccgtatgctatataaaagagatgcctgtacggctttaaattgaatttcttttttatatgccctccaagattaggaaaaactcctattctgttaga |
29800365 |
T |
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| Q |
282 |
ctctcagctcagggtaatgatccatcaacctgctacttctttgtatgagggacaagcgggagaatg |
347 |
Q |
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| T |
29800364 |
ctctcagctcagggtaatgatccatcaacttgctacttctttgtatgagggacaagtaggagaatg |
29800299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 347
Target Start/End: Original strand, 2399078 - 2399130
Alignment:
| Q |
296 |
taatgatccatcaa-cctgctacttctttgtatgagggacaagcgggagaatg |
347 |
Q |
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| T |
2399078 |
taatgatccattaaacctaccacttctttgtatgagggacaagcaggagaatg |
2399130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 7959024 - 7958950
Alignment:
| Q |
261 |
aaaaactcctattctgttagactctcagctcagggtaatgatccatcaacctgctacttctttgtatgagggacaag |
337 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7959024 |
aaaaacccctattctgttagactctcaggg--gggtaatgatccaccaacctgctacttctttgtatgagggacaag |
7958950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 19371050 - 19371099
Alignment:
| Q |
33 |
tctttaaaaaagattctcaaacaaaaaagaaaggtgattattatattttg |
82 |
Q |
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| T |
19371050 |
tctttaaaaaagattctcaaacaaaaaagaaaggtgattattatattttg |
19371099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 19371108 - 19371157
Alignment:
| Q |
33 |
tctttaaaaaagattctcaaacaaaaaagaaaggtgattattatattttg |
82 |
Q |
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| T |
19371108 |
tctttaaaaaagattctcaaacaaaaaagaaaggtgattattatattttg |
19371157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 19370996 - 19371041
Alignment:
| Q |
37 |
taaaaaagattctcaaacaaaaaagaaaggtgattattatattttg |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19370996 |
taaaaaagattctcaaacaaaaaagaaaggtgattattatattttg |
19371041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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