View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21667_high_14 (Length: 339)
Name: NF21667_high_14
Description: NF21667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21667_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 46790607 - 46790299
Alignment:
| Q |
15 |
gaaggacatatcttctacgtgttgttaatgctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctat |
114 |
Q |
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| T |
46790607 |
gaaggacatatcttctacgtgttgttaatgctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctat |
46790508 |
T |
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| Q |
115 |
gtacacaaaaccaatgacaagagattacatttgcatatcaccaggacaaacaatggatgtattgttgcatgccaaccaagaacctagtcactactatatg |
214 |
Q |
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| T |
46790507 |
gtacacaaaaccaatgacgagagattacatttgcatatcaccaggacaaacaatggatgtattgttacatgccaaccaagaacctagtcactactatatg |
46790408 |
T |
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| Q |
215 |
gctgcaagagcatattcaagtgaagcaggattagagtttgataatactacatccactggtatagtacaatacagtgggattcatacaccactttcaactc |
314 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
46790407 |
gctgcaagagcatattcaagtgcagcaggattagagtttgataataccacagccactggtatagtacaatacagttggagtcatacaccactttcaactc |
46790308 |
T |
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| Q |
315 |
cttcattac |
323 |
Q |
| |
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||||||||| |
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| T |
46790307 |
cttcattac |
46790299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 46783165 - 46782854
Alignment:
| Q |
15 |
gaaggacatatcttctacgtgttgttaatgctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46783165 |
gaaggacatatcttctacgtgttgttaatgctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctat |
46783066 |
T |
|
| Q |
115 |
gtacacaaaaccaatgacaagagattacatttgcatatcaccaggacaaacaatggatgtattgttgcatgccaaccaagaacctagtcactactatatg |
214 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46783065 |
gtacacaaaaccaatgacgagagattacatttgcatatcaccaggacaaacaatggatgtattgttacatgccaaccaagaacctagtcactactatatg |
46782966 |
T |
|
| Q |
215 |
gctgcaagagcatattcaagtg---aagcaggattagagtttgataatactacatccactggtatagtacaatacagtgggattcatacaccactttcaa |
311 |
Q |
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||||||||||||||||||| || | ||| || ||||||||||||| || ||| |||||| |||||| |||||||| | || | |||| ||| |||||| |
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| T |
46782965 |
gctgcaagagcatattcaactgataacgcaagagtagagtttgataacaccacaaccactgctatagtgcaatacagagagagttatactccaatttcaa |
46782866 |
T |
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| Q |
312 |
ctccttcattac |
323 |
Q |
| |
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|| ||||||||| |
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| T |
46782865 |
cttcttcattac |
46782854 |
T |
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