View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21667_high_1_N (Length: 691)
Name: NF21667_high_1_N
Description: NF21667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21667_high_1_N |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 30 - 545
Target Start/End: Complemental strand, 36724767 - 36724252
Alignment:
| Q |
30 |
tttaccacagttttatggagtttatgaaatagaggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatct |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
36724767 |
tttaccacagttttatggagtttatgaaagagaggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgagcaacgcatct |
36724668 |
T |
|
| Q |
130 |
tcttgaggattggagattggctcaaattatctgcagtggtcatggagctcccgttaccctaaactagccgaatctaaacagctaggaaataattcgatgg |
229 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36724667 |
tcttgagaattggagatcggctcaaattatctgcagtggtcatggagctcccgttaccctaaactagccgaatctaaacagccaggaaataattcgatgt |
36724568 |
T |
|
| Q |
230 |
aaaaagccagccctcgaccgttacaaatgcaatattgatgcctcattttcttcagctatgaacaaagtaggaattgaaatgtgtatctgcaatgacgaac |
329 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36724567 |
aaaacgccagccctcgaccgttacaaatgcaatattgatgcctcattttcttcagctatgaacaaagtaggaattgaaatgtgtatctgcaatgacgcat |
36724468 |
T |
|
| Q |
330 |
gagactttatttttacaaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcaga |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36724467 |
gagactttatttttacaaaaacatattggttctctcctctttgtgatgttaacataggggaagcatctgatttgcatacggctttggagtggacatcaga |
36724368 |
T |
|
| Q |
430 |
ccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattata |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
36724367 |
ccttcaatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagatagtagtgaatttagatgcattata |
36724268 |
T |
|
| Q |
530 |
gatgcttgtagacagt |
545 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36724267 |
gatgcttgtagacagt |
36724252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 62 - 587
Target Start/End: Original strand, 711791 - 712314
Alignment:
| Q |
62 |
aggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttgaggattggagattggctcaaattatct |
161 |
Q |
| |
|
||||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||| | || ||| ||||| ||||||| || | || ||||||||||| |
|
|
| T |
711791 |
aggaacttgaaaccttggcagcaaaagaacgaaacaaacatgcaggtggttgaacgagcaatgcaccttctcgaggattagataccgggtcaaattatct |
711890 |
T |
|
| Q |
162 |
gcagtggtcatggagctcccgttaccctaaactagccgaatctaaacagctaggaaataattcgatggaaaaagccagccctcgaccgttacaaatgcaa |
261 |
Q |
| |
|
| | ||| |||||| ||||||| | |||| | | ||| ||| || ||||||||| ||| |||||||||||| | ||| |||||||| ||||| |
|
|
| T |
711891 |
gaggcagtcgtggagcacccgttaacagaaaccaattggatcaaaatagttaggaaatagttccgtggaaaaagccaacactcagacgttacaagtgcaa |
711990 |
T |
|
| Q |
262 |
tattgatgcctcattttcttcagctatgaacaaagtaggaattgaaatgtgtatctgcaatgacgaacgagactttatttttacaaaaacatattggttc |
361 |
Q |
| |
|
|| |||| ||||||||||||||||||||| ||| || |||||| ||||| |||||| |||| | | |||||| | || ||||||||||||||||| |
|
|
| T |
711991 |
tagtgat-cctcattttcttcagctatga-caaggtgagaattgggatgtgcatctgcgatgatgcagaggactttggtcttgcaaaaacatattggttc |
712088 |
T |
|
| Q |
362 |
tctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttttctctag |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | ||| |||||| ||||||| ||||||||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
712089 |
tctcctctttgtgatgttgacataggggaaggagtttcttttcatacgactttggaatggacatcataccttcaatttgataatgtagattttgctctag |
712188 |
T |
|
| Q |
462 |
actttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatt |
561 |
Q |
| |
|
||| | ||| | |||||||||| |||||||| | || |||||| | |||||||| |||| |||||| ||| |||||| |||| ||||| | |||||| |
|
|
| T |
712189 |
actctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaatttggatgtattatacttgcatgtagatagttgtttcaaaatagatt |
712288 |
T |
|
| Q |
562 |
tcaaaactctcaaattgagtttaata |
587 |
Q |
| |
|
| |||||||||| |||||||||||| |
|
|
| T |
712289 |
ttaaaactctcatgttgagtttaata |
712314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 40 - 665
Target Start/End: Original strand, 716975 - 717603
Alignment:
| Q |
40 |
ttttatggagtttatgaaataga-ggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttg-agg |
137 |
Q |
| |
|
|||||||||||||||| || ||| |||||||||||||||| ||||| ||| |||||||| ||||||||||||||||| | | | || ||||||| | | |
|
|
| T |
716975 |
ttttatggagtttatggaagagaaggaacttgaaactttggtggcaaaagaatgaaacaaacatgcaggtggttgaacgagcatcacaccttcttggaag |
717074 |
T |
|
| Q |
138 |
attggagattggctcaaattatctgcag-tggtcatggagctcccgttaccctaaactagccgaatctaaacagctaggaaataattcgatggaaaaagc |
236 |
Q |
| |
|
||||||||| ||||||||||| | ||| ||||| ||||| | |||| | |||| || || |||||| ||| ||||||| | || |||||||| | |
|
|
| T |
717075 |
attggagatcagctcaaattat-tccaggtggtcgcggagcgcttgttaacagaaaccagtcggatctaagcagttaggaaacagatcagtggaaaaatc |
717173 |
T |
|
| Q |
237 |
cagccctcgaccgttacaaatgcaatattgatgcctcattttcttcagctatgaacaaagtaggaattgaaatgtgtatctgcaatgacgaacgagactt |
336 |
Q |
| |
|
|| | ||| ||||||||| ||| ||| ||||||||||||||||| ||||||||||| || ||||||| |||||| || | |||| | | | ||||| |
|
|
| T |
717174 |
caacactcagccgttacaagtgctttatcgatgcctcattttcttcggctatgaacaaggtgggaattgggatgtgtttccacgatgatgcaggggactt |
717273 |
T |
|
| Q |
337 |
tatttttacaaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaa |
436 |
Q |
| |
|
| || || |||||| || ||||||||||||||||||||||||| |||||||||||| | || ||| |||||| |||| ||||||||||| |||||||| |
|
|
| T |
717274 |
tgttcttgcaaaaaaatcttggttctctcctctttgtgatgttaacataggggaagtagttggtttacatacgattttgaagtggacatcacaccttcaa |
717373 |
T |
|
| Q |
437 |
tttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagatgctt |
536 |
Q |
| |
|
||||||||| |||||| ||||||||| | ||| | ||| |||||| |||||| | | || ||||| | |||||||| |||| ||||||| || | |
|
|
| T |
717374 |
tttgataatgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagtgaatttggatgtattatagttgaat |
717473 |
T |
|
| Q |
537 |
gtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgctcatgagttagctcagatagtcccaca |
635 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||| |||||||||||| || || ||||||| | | || | ||||||||||| |||| |||||| |
|
|
| T |
717474 |
gtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcacttacgagttagctcatatagccccaca |
717573 |
T |
|
| Q |
636 |
taatactaactcccacacctatgatgatgt |
665 |
Q |
| |
|
|||| ||| || | ||| ||||||||||| |
|
|
| T |
717574 |
taatgctagatctctcacttatgatgatgt |
717603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 532 - 663
Target Start/End: Complemental strand, 36723895 - 36723764
Alignment:
| Q |
532 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
|
| Q |
632 |
cacataatactaactcccacacctatgatgat |
663 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |
|
|
| T |
36723795 |
cacataatactagctctcacacctatgatgat |
36723764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 397 - 587
Target Start/End: Original strand, 14541058 - 14541248
Alignment:
| Q |
397 |
tgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagc |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| | ||| |||||||||| |||||||| |
|
|
| T |
14541058 |
tgatttgcatacggctttggagtggacatcataccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatat |
14541157 |
T |
|
| Q |
497 |
atataagataatggtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
587 |
Q |
| |
|
|| |||||||| || |||||||||| |||||||||| ||||||||| | ||||| |||| ||| ||||||||| ||||||||||||| |
|
|
| T |
14541158 |
gtagaagataatagtaaatttagatgtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 65 - 294
Target Start/End: Original strand, 14540204 - 14540433
Alignment:
| Q |
65 |
aacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttgaggattggagattggctcaaattatctgca |
164 |
Q |
| |
|
|||| ||||||||| ||||||| |||| ||||||||| |||||||| |||||| | ||| || ||||||||||||||||||| |||||||||||| | | |
|
|
| T |
14540204 |
aactggaaactttggcagcaaaagaacaaaacaaatacgcaggtgggtgaacgagcaacacaccttcttgaggattggagatcggctcaaattattttcg |
14540303 |
T |
|
| Q |
165 |
gtggtcatggagctcccgttaccctaaactagccgaatctaaacagctaggaaataattcgatggaaaaagccagccctcgaccgttacaaatgcaatat |
264 |
Q |
| |
|
|||||| ||| | |||| | | ||| | || |||||||||| ||| || | || | ||| |||||||||| ||| | ||||||||||||||| |
|
|
| T |
14540304 |
gtggtcgcggaacgtccgtcatcaggaaccaaccagatctaaacagtcaggtaacagttgggtgggaaaagccagcactcaggcattacaaatgcaatat |
14540403 |
T |
|
| Q |
265 |
tgatgcctcattttcttcagctatgaacaa |
294 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
14540404 |
cgatgcctcattttcttcatatatgaacaa |
14540433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 225 - 491
Target Start/End: Original strand, 8267003 - 8267269
Alignment:
| Q |
225 |
gatggaaaaagccagccctcgaccgttacaaatgcaatattgatgcctcattttcttcagctatgaacaaagtaggaattgaaatgtgtatctgcaatga |
324 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||| | ||||| ||||||||||| |||||||| | |||| |
|
|
| T |
8267003 |
gatgggaaaagccagcaaccgaccgttacaaatgcaatattgatgcttcgttttcttcatccccgaacatagtaggaattgggatgtgtattcgtgatga |
8267102 |
T |
|
| Q |
325 |
cgaacgagactttatttttacaaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggaca |
424 |
Q |
| |
|
| | ||||||| || || ||||||| ||| || |||||||| ||||||||||||||| || || || ||| ||||||||| ||||| |||| |
|
|
| T |
8267103 |
tgcagaagactttgttcttgcaaaaactgcttgattttctcctctatgtgatgttgacatatggaaaattgttggttttcatacggctcgggagtagaca |
8267202 |
T |
|
| Q |
425 |
tcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaa |
491 |
Q |
| |
|
||| |||||||| ||||||||| |||||| | |||||| | ||| | |||||||||| |||||| |
|
|
| T |
8267203 |
tcaaaccttcaacttgataatatggattttgttttagactctaagaaggttgtggatgcttttagaa |
8267269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 29984959 - 29985012
Alignment:
| Q |
92 |
gaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttgaggattggaga |
145 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||||||||| || |||||| |
|
|
| T |
29984959 |
gaaacaaatatgcaggttgttgaacgtgctacacatcttcttgatgaatggaga |
29985012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 355 - 454
Target Start/End: Complemental strand, 2087632 - 2087537
Alignment:
| Q |
355 |
ttggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttt |
454 |
Q |
| |
|
||||||||||||||||||||||||||| || || |||||| ||||||||| ||||| | |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
2087632 |
ttggttctctcctctttgtgatgttgatattggagaagcag----tttgcatacaactttgcaatggacatcagaccttcaatttgataaaatagatttt |
2087537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 36473917 - 36473975
Alignment:
| Q |
248 |
cgttacaaatgcaatattgatgcctcattttcttcagctatgaacaaagtaggaattga |
306 |
Q |
| |
|
|||| ||||||||| ||||||||||| || |||||| |||||||||||||||||||||| |
|
|
| T |
36473917 |
cgttgcaaatgcaacattgatgcctcgttctcttcatctatgaacaaagtaggaattga |
36473975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 162
Target Start/End: Original strand, 36473707 - 36473831
Alignment:
| Q |
39 |
gttttatggagtttatgaaatagag-gaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttgagg |
137 |
Q |
| |
|
|||||||||||||| ||||| ||| ||| ||||| ||||| || |||| ||| ||||| |||||||||||||||||||| | ||| ||| ||||| | | |
|
|
| T |
36473707 |
gttttatggagtttttgaaagagaatgaatttgaagctttggcaacaaaagaatgaaacgaatatgcaggtggttgaacgagcaacacattttcttaaag |
36473806 |
T |
|
| Q |
138 |
attggagattggctcaaattatctg |
162 |
Q |
| |
|
||| | || ||||||||||||||| |
|
|
| T |
36473807 |
atttaaaatcggctcaaattatctg |
36473831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 36474006 - 36474068
Alignment:
| Q |
355 |
ttggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttgga |
417 |
Q |
| |
|
|||||| || ||||||||||||||||| |||||||||||| | ||||||||||||| |||| |
|
|
| T |
36474006 |
ttggttttcccctctttgtgatgttgatataggggaagcaatgggtttgcatacggctctgga |
36474068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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