View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21667_high_20 (Length: 322)
Name: NF21667_high_20
Description: NF21667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21667_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 35 - 321
Target Start/End: Original strand, 46039041 - 46039325
Alignment:
| Q |
35 |
atagacacatgcaaatgctgacatgctaaaagtttgtatataaaaacatcctcactatttaaagcatataactaatctcaagaagaattgnnnnnnnnta |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | |
|
|
| T |
46039041 |
atagacacatgcaaatgctgacatgctaaaagtttgtatataaaaacatcctcactatttaaagcata-acttaatctcaagaagaattgaaaaaaa-tc |
46039138 |
T |
|
| Q |
135 |
aaattaagattctatcattaattaaagcgacattaatgactattttactagtgttccctaggaggtttgaatatctcttgaggataaaagatcaaattct |
234 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46039139 |
aaattcagattctatcgttaattaaagcgacattaatgactattttaccagtgttccctaggaggtttgaatatctcttgaggataaaagatcaaattct |
46039238 |
T |
|
| Q |
235 |
taccactaaactgacacctcattgatagactaaaacatctatattggggcatcattagcttctgctagatcactgtattgtctctgt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46039239 |
taccactaaactgacacctcattgatagactacaacatctatattggggcatcattagcttctgctagatcactgtattgtctctgt |
46039325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 46038987 - 46039019
Alignment:
| Q |
3 |
atatccattgaaatcaagatacaatcatctata |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
46038987 |
atatccattgaaatcaagatacaatcatctata |
46039019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University