View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21667_high_24 (Length: 302)
Name: NF21667_high_24
Description: NF21667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21667_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 29 - 283
Target Start/End: Original strand, 30605006 - 30605266
Alignment:
| Q |
29 |
acatagctcaccctgcacgtgcagacctctacaacctacgtgccggacgaatcagcaccgtcaacagtttaaccctcccaatcctccgcaatttacgtct |
128 |
Q |
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| T |
30605006 |
acatagctcaccctgcacgtgcagacctctacaacccacgtgccggacgaatcagcaccgtcaacagtttaaccctcccaatcctccgcaatttacgtct |
30605105 |
T |
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| Q |
129 |
tggtgttgaatacgt------ctgcagggtacagtatatttctatattccatgcatgattctccctttccctggtcataagtataagagacggtcgaatc |
222 |
Q |
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| T |
30605106 |
tggtgccgaatacgtagtcctctacagggtacagtatatttctatattccatgcatgattctccctttccctggtcataagtataagagacggtcgaatc |
30605205 |
T |
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| Q |
223 |
attaaatgttcatatatttggtctaaaatttagattaaatacatgaacttttgatgatgtc |
283 |
Q |
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| T |
30605206 |
attaaatgttcatatatttggtctaaaatttagattaaatacatgaacttttgttgatgtc |
30605266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 32248518 - 32248422
Alignment:
| Q |
29 |
acatagctcaccctgcacgtgcagacctctacaacctacgtgccggacgaatcagcaccgtcaacagtttaaccctcccaatcctccgcaatttacg |
125 |
Q |
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| T |
32248518 |
acatcgctcgccctgcacgtgcagatctctacaacccacgtgcaggtcgcatcagcgatgctaacagtttaaccctcccaatccttcgcaatttacg |
32248422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 32253262 - 32253166
Alignment:
| Q |
29 |
acatagctcaccctgcacgtgcagacctctacaacctacgtgccggacgaatcagcaccgtcaacagtttaaccctcccaatcctccgcaatttacg |
125 |
Q |
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| T |
32253262 |
acatcgctcgccctgcacatgcagatctctacaacccacgtgcaggtcgcatcagtgatgttaacagtttaaccctcccaatcctccgcaatttacg |
32253166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 32242690 - 32242594
Alignment:
| Q |
29 |
acatagctcaccctgcacgtgcagacctctacaacctacgtgccggacgaatcagcaccgtcaacagtttaaccctcccaatcctccgcaatttacg |
125 |
Q |
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|||| |||| |||||||| |||||| |||||||||| |||||| || || ||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
32242690 |
acatcgctcgccctgcacatgcagatctctacaacccacgtgcaggtcgcatcagtgatgttaacagtttaactctcccaatcctccgcaatttacg |
32242594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 22502825 - 22502785
Alignment:
| Q |
234 |
atatatttggtctaaaatttagattaaatacatgaactttt |
274 |
Q |
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| T |
22502825 |
atatatttggtctaaaatttggattaaatacataaactttt |
22502785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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