View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21667_high_2_N (Length: 599)
Name: NF21667_high_2_N
Description: NF21667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21667_high_2_N |
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| [»] scaffold0477 (1 HSPs) |
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| [»] scaffold0075 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 4 - 580
Target Start/End: Complemental strand, 18181287 - 18180712
Alignment:
| Q |
4 |
tatagtagatataccaagttatcgttgcaaacccgaagatattattacagcgaaggatgaacaaaaatatagaactctgattcaaaattctcttgaatca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18181287 |
tatagtagatataccaagttatcgttgcaaacccgaagatattattacagcgaaggatgaacaaaaatctagaactctgattcaaaattctcttgaatca |
18181188 |
T |
|
| Q |
104 |
gccccccgcaaaaaattgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatcgtaaatgggttgatttgaaaa |
203 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
18181187 |
gccccccgcgaaaaattgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatagtaaatgggttggtttgaaaa |
18181088 |
T |
|
| Q |
204 |
ttaatgaattgctggtcgtagaagattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatag |
303 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18181087 |
ttaatgaattgctggttgtagaatattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatag |
18180988 |
T |
|
| Q |
304 |
accgtgggtgggtataggaaaattgttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccac |
403 |
Q |
| |
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| ||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
18180987 |
a-cgtgggtgggtataggaaatttgttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccac |
18180889 |
T |
|
| Q |
404 |
atcaaagttggaataatgatatctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggta |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180888 |
atcaaagttggaataatgatatctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggta |
18180789 |
T |
|
| Q |
504 |
aacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgatgatgtcc |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18180788 |
aacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgattatgtcc |
18180712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 4 - 580
Target Start/End: Complemental strand, 10294 - 9717
Alignment:
| Q |
4 |
tatagtagatataccaagttatcgttgcaaacccgaagatattattacagcgaaggatgaacaaaaa-ta-tagaactctgattcaaaattctcttgaat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
10294 |
tatagtagatataccaagttatcgttgcaaacccgaagatattattacagcgaaggatgaacaaaaaatactagaactctgattcaaaattctcttgaat |
10195 |
T |
|
| Q |
102 |
cagccccccgcaaaaaattgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatcgtaaatgggttgatttgaa |
201 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
10194 |
cagccccccgcgaaaaattgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatagtaaatgggttggtttgaa |
10095 |
T |
|
| Q |
202 |
aattaatgaattgctggtcgtagaagattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtat |
301 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10094 |
aattaatgaattgctggttgtagaatattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtat |
9995 |
T |
|
| Q |
302 |
agaccgtgggtgggtataggaaaattgttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatcc |
401 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
9994 |
aga-cgtgggtgggtataggaaatttgttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatcc |
9896 |
T |
|
| Q |
402 |
acatcaaagttggaataatgatatctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcgg |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9895 |
acatcaaagttggaataatgatatctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcgg |
9796 |
T |
|
| Q |
502 |
taaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgatgatgtcc |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9795 |
taaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgattatgtcc |
9717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 20578 - 20336
Alignment:
| Q |
4 |
tatagtagatataccaagttatcgttgcaaacccgaagatattattacagcgaaggatgaacaaaaatatagaactctgattcaaaattctcttgaatca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
20578 |
tatagtagatataccaagttatcgttgcaaacccgaagatattattacagcgaaggatgaacaaaaatctagaactctgattcaaaattctcttgaatca |
20479 |
T |
|
| Q |
104 |
gccccccgcaaaaaattgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatcgtaaatgggttgatttgaaaa |
203 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |
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|
| T |
20478 |
gccccccacgaagaattgccaatccatttgactctttatccattccaatataaaggattagtcaatcaaatattagatagtaaatgggttggtttgaaaa |
20379 |
T |
|
| Q |
204 |
ttaatgaattgctggtcgtagaagattattctcgtcagactta |
246 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
20378 |
ttaatgaattgctggctgtagaatattattctcgtcagactta |
20336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 331 - 580
Target Start/End: Complemental strand, 37189616 - 37189370
Alignment:
| Q |
331 |
attccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatctatt |
430 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
37189616 |
attccttgcccactttattccactattttttttattacagaaaacagaaataaattaggaatagagaattcacatcaaagttggaataatgatatctatt |
37189517 |
T |
|
| Q |
431 |
tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccag |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37189516 |
tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagag---ttcgaaccctcggtaaacaaaaagcctacatagcagttccag |
37189420 |
T |
|
| Q |
531 |
tgctacgccttcaaccactcggccatctctcctacataatgatgatgtcc |
580 |
Q |
| |
|
| || | |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37189419 |
tactgcaccttcaaccactcggccatctctcctacataatgattatgtcc |
37189370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 24934029 - 24934116
Alignment:
| Q |
120 |
tgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatcgtaaatgggttgatttgaaaattaa |
207 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
24934029 |
tgccaacccatttgactcttcatccattctaatataaaggattagtcaatcaaataatagatagtaaatgggttggtttgaaaattaa |
24934116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 475 - 569
Target Start/End: Complemental strand, 244912 - 244818
Alignment:
| Q |
475 |
cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataa |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
244912 |
cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccaatgctacgccttgaaccgctcggccatctttcctacataa |
244818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 503
Target Start/End: Original strand, 207782 - 207817
Alignment:
| Q |
468 |
aagggtgcggaaagagagggattcgaaccctcggta |
503 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
207782 |
aagggagcggaaagagagggattcgaaccctcggta |
207817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 487 - 573
Target Start/End: Original strand, 27029783 - 27029873
Alignment:
| Q |
487 |
gattcgaaccctcggtaaacaaaaa----gcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgat |
573 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27029783 |
gattcgaaccctcggtaaaaaaaaaaaaagcttacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgat |
27029873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 36877843 - 36877790
Alignment:
| Q |
166 |
caatcaaataatagatcgtaaatgggttgatttgaaaattaatgaattgctggt |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36877843 |
caatcaaataatagatagtaaatgggttggtttgaaaattaatgaattgctggt |
36877790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 503
Target Start/End: Original strand, 42790 - 42818
Alignment:
| Q |
475 |
cggaaagagagggattcgaaccctcggta |
503 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42790 |
cggaaagagagggattcgaaccctcggta |
42818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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