View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21667_high_3 (Length: 582)
Name: NF21667_high_3
Description: NF21667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21667_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 244 - 383
Target Start/End: Original strand, 30835336 - 30835475
Alignment:
| Q |
244 |
caagcaagcatcaaaagggcactataatcattcaaaatccatttgttggctagtctgcgaccgtaaaacatacactacattagctaaatagtttcaatca |
343 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30835336 |
caagcaagcatcaacagggccctgtaatcattcaaaatccatttgttggctagtctgcaactgtaaaacatacactacattagctaaatagtttcaatca |
30835435 |
T |
|
| Q |
344 |
cattagattaccaatttattaattagcatttgttctttaa |
383 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30835436 |
cattacattaccaatttattaattagcatttgttctttaa |
30835475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 244 - 383
Target Start/End: Original strand, 3192108 - 3192247
Alignment:
| Q |
244 |
caagcaagcatcaaaagggcactataatcattcaaaatccatttgttggctagtctgcgaccgtaaaacatacactacattagctaaatagtttcaatca |
343 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3192108 |
caagcaagcatcaacagggccctgtaatcattcaaaatccatttgttggctagtctgcaactgtaaaacatacactacattagctaaatagtttcaatct |
3192207 |
T |
|
| Q |
344 |
cattagattaccaatttattaattagcatttgttctttaa |
383 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
3192208 |
cattacattaccaatttattaattagcctttgttctttaa |
3192247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University