View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21667_low_1 (Length: 287)
Name: NF21667_low_1
Description: NF21667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21667_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 36724498 - 36724767
Alignment:
| Q |
1 |
ctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||| |
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| T |
36724498 |
ctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggcgttttacatcgaattatttcctggctgtttagatt |
36724597 |
T |
|
| Q |
101 |
cggctagtttagggtaacgggagctccatgaccactgcagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||||||||| |
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| T |
36724598 |
cggctagtttagggtaacgggagctccatgaccactgcagataatttgagccgatctccaattctcaagaagatgcgttgctcgttcaaccacctgcata |
36724697 |
T |
|
| Q |
201 |
tttgtttcgttcctttgctggcaaagtttcaagttcctctatttcataaactccataaaactgtggtaaa |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36724698 |
tttgtttcgttcctttgctggcaaagtttcaagttcctctctttcataaactccataaaactgtggtaaa |
36724767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 712018 - 711791
Alignment:
| Q |
10 |
tcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggctagtt |
109 |
Q |
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| T |
712018 |
tcatagctgaagaaaatgagg-atcactattgcacttgtaacgtctgagtgttggctttttccacggaactatttcctaactattttgatccaattggtt |
711920 |
T |
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| Q |
110 |
tagggtaacgggagctccatgaccactgcagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcg |
209 |
Q |
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| T |
711919 |
tctgttaacgggtgctccacgactgcctcagataatttgacccggtatctaatcctcgagaaggtgcattgctcgttcaaccacctgcatgtttgtttcg |
711820 |
T |
|
| Q |
210 |
ttcctttgctggcaaagtttcaagttcct |
238 |
Q |
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| T |
711819 |
ttcttttgctgccaaggtttcaagttcct |
711791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 717231 - 716975
Alignment:
| Q |
6 |
ttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggct |
105 |
Q |
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| T |
717231 |
ttgttcatagccgaagaaaatgaggcatcgataaagcacttgtaacggctgagtgttggatttttccactgatctgtttcctaactgcttagatccgact |
717132 |
T |
|
| Q |
106 |
agtttagggtaacgggagctccatgaccac-tgcagataatttgagccaatctccaatcctc-aagaagatgcgttacacgttcaaccacctgcatattt |
203 |
Q |
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| T |
717131 |
ggtttctgttaacaagcgctccgcgaccacctgga-ataatttgagctgatctccaatcttccaagaaggtgtgatgctcgttcaaccacctgcatgttt |
717033 |
T |
|
| Q |
204 |
gtttcgttcctttgctggcaaagtttcaagttcc-tctatttcataaactccataaaa |
260 |
Q |
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| T |
717032 |
gtttcattcttttgccaccaaagtttcaagttccttctcttccataaactccataaaa |
716975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 14540433 - 14540204
Alignment:
| Q |
6 |
ttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggct |
105 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||||||| | ||| |||||||||| ||| | || | || ||| |||||||||| || | |
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| T |
14540433 |
ttgttcatatatgaagaaaatgaggcatcgatattgcatttgtaatgcctgagtgctggcttttcccacccaactgttacctgactgtttagatctggtt |
14540334 |
T |
|
| Q |
106 |
agtttagggtaacgggagctccatgaccactgcagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgt |
205 |
Q |
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||| | | |||| | ||| |||||| | | |||||||||||| ||||||||||||||||||| || ||| | |||||| |||||||| ||||||| |
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| T |
14540333 |
ggttcctgatgacggacgttccgcgaccaccgaaaataatttgagccgatctccaatcctcaagaaggtgtgttgctcgttcacccacctgcgtatttgt |
14540234 |
T |
|
| Q |
206 |
ttcgttcctttgctggcaaagtttcaagtt |
235 |
Q |
| |
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|| |||| ||||||| ||||||||| |||| |
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| T |
14540233 |
tttgttcttttgctgccaaagtttccagtt |
14540204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 261
Target Start/End: Complemental strand, 36473831 - 36473707
Alignment:
| Q |
138 |
cagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcgttcctttgctggcaaagtttcaagttc- |
236 |
Q |
| |
|
||||||||||||||| || | |||| | ||||| ||| ||| | |||||||||||||||||||| ||||| ||| |||| || ||||| ||||| ||| |
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| T |
36473831 |
cagataatttgagccgattttaaatctttaagaaaatgtgttgctcgttcaaccacctgcatattcgtttcattcttttgttgccaaagcttcaaattca |
36473732 |
T |
|
| Q |
237 |
ctctatttcataaactccataaaac |
261 |
Q |
| |
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||| ||||| |||||||||||||| |
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| T |
36473731 |
ttctctttcaaaaactccataaaac |
36473707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36473968 - 36473917
Alignment:
| Q |
1 |
ctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacg |
52 |
Q |
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||||||||||||||| |||||| || ||||||||||| ||||||||| |||| |
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| T |
36473968 |
ctactttgttcatagatgaagagaacgaggcatcaatgttgcatttgcaacg |
36473917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 8267061 - 8267003
Alignment:
| Q |
17 |
tgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatc |
75 |
Q |
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||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
8267061 |
tgaagaaaacgaagcatcaatattgcatttgtaacggtcggttgctggcttttcccatc |
8267003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 29985012 - 29984959
Alignment:
| Q |
155 |
tctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttc |
208 |
Q |
| |
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|||||| || ||||||||||| || |||||||||| ||||||||||||||||| |
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| T |
29985012 |
tctccattcatcaagaagatgtgtagcacgttcaacaacctgcatatttgtttc |
29984959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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