View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21667_low_2 (Length: 281)
Name: NF21667_low_2
Description: NF21667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21667_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 36724402 - 36724252
Alignment:
| Q |
1 |
tctgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaa |
100 |
Q |
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| T |
36724402 |
tctgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaa |
36724303 |
T |
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| Q |
101 |
gcatataagataatggtgaatttagatgcattatagatgcttgtagacagt |
151 |
Q |
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| T |
36724302 |
gcatataagatagtagtgaatttagatgcattatagatgcttgtagacagt |
36724252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 138 - 269
Target Start/End: Complemental strand, 36723895 - 36723764
Alignment:
| Q |
138 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
237 |
Q |
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| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
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| Q |
238 |
cacataatactaactcccacacctatgatgat |
269 |
Q |
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| T |
36723795 |
cacataatactagctctcacacctatgatgat |
36723764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 712131 - 712314
Alignment:
| Q |
10 |
catacggctttggagtggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataag |
109 |
Q |
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| T |
712131 |
catacgactttggaatggacatcataccttcaatttgataatgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaag |
712230 |
T |
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| Q |
110 |
ataatggtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
193 |
Q |
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| T |
712231 |
atagttgtgaatttggatgtattatacttgcatgtagatagttgtttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 717349 - 717603
Alignment:
| Q |
18 |
tttggagtggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggt |
117 |
Q |
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| T |
717349 |
tttgaagtggacatcacaccttcaatttgataatgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagt |
717448 |
T |
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| Q |
118 |
gaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgctc |
216 |
Q |
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| T |
717449 |
gaatttggatgtattatagttgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcactt |
717548 |
T |
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| Q |
217 |
atgagttagctcagatagtcccacataatactaactcccacacctatgatgatgt |
271 |
Q |
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| T |
717549 |
acgagttagctcatatagccccacataatgctagatctctcacttatgatgatgt |
717603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 14541058 - 14541248
Alignment:
| Q |
3 |
tgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagc |
102 |
Q |
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| T |
14541058 |
tgatttgcatacggctttggagtggacatcataccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatat |
14541157 |
T |
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| Q |
103 |
atataagataatggtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
193 |
Q |
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| T |
14541158 |
gtagaagataatagtaaatttagatgtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 2087591 - 2087537
Alignment:
| Q |
6 |
tttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttt |
60 |
Q |
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| T |
2087591 |
tttgcatacaactttgcaatggacatcagaccttcaatttgataaaatagatttt |
2087537 |
T |
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