View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21668_high_1 (Length: 1431)
Name: NF21668_high_1
Description: NF21668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21668_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 748; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 2 - 761
Target Start/End: Original strand, 31852182 - 31852941
Alignment:
| Q |
2 |
attagatatataccttggtgatgttggcaaaggtaagcatgagattgagtccatcaagtccacttgtaatttctgaaggaccaacttcaaagagactacc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31852182 |
attagatatataccttggtgatgttggcaaaggtaagcatgagattgagtccatcaagtccacttgtaatttctgaaggaccaacttcaaagagactacc |
31852281 |
T |
|
| Q |
102 |
aaattggttagaaaaggctggattattgctgaaaatattgaaaggattcttaaattgtccaccaaatggccaaatgcttttcttaggtgccaagccacta |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31852282 |
aaattggttagaaaaggctggattattgctgaaaatattgaaaggattcttaaattgtccaccaaatggccaaatgcttttcttaggtgccaagccacta |
31852381 |
T |
|
| Q |
202 |
agatcttctttttgtattttgaaaattcttcccttgttctgttcatccaaaaaactttctaacttcccttttggactctgtttgttgtcaagtacaagtg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31852382 |
agatcttctttttgtattttgaaaattcttcccttgttctgttcatccaaaaaactttctaacttcccttttggactctgtttgttgtcaggtacaagta |
31852481 |
T |
|
| Q |
302 |
caaaattaataaaccaaattaggaaaatttagaaaagcaaaattattatatttgattatagaagggtatactctaccttgaatgctgcttggagcacttt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31852482 |
caaaattaataaaccaaattaggaaaatttagaaaagcaaaattattatatttgattatagaagggtatactctaccttgaatgctgcttggagcacttt |
31852581 |
T |
|
| Q |
402 |
ggagctgaatgctgtgaggactgattctgggtctcgccctgcaggcccaaaaaatgcctgcaccaatacatgtatgtcacacatttaatcatgtccctta |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31852582 |
ggagctgaatgctgtgaggactgattctgggtctcgccctgcaggcccaaaaaatgcctgcaccaatacatgtatgtcacacatttaatcatgtccctta |
31852681 |
T |
|
| Q |
502 |
agattgctagtgtcacatgtaataatagatcaaataatgttgttagaagttgtaacctcaagatttactggagcagaggcagaggaaggtggcatgtgca |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31852682 |
agattgctagtgtcacatgtaataatagatcaaataatgttgttagaagttgtaacctcaagatttactggagcagaggcagaggaaggtggcatgtgca |
31852781 |
T |
|
| Q |
602 |
atgctgccacaaaaagcttctcattctcatctctattaaccaagtacataggtgttcctgcaggtaccctcataatgtcaccagcttcaaggttaaatct |
701 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31852782 |
atgctgcaacaaaaagcttctcattctcatctctattaaccaagtacataggtgttcctgcaggtaccctcataatgtcaccagcttcaaggttaaatct |
31852881 |
T |
|
| Q |
702 |
ctcggttttatcttccatcaccaacccaattattcctctccctatagtaattcaacaagg |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31852882 |
ctcggttttatcttccatcaccaacccaattattcctctccctatagtaattcaacaagg |
31852941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 1120 - 1419
Target Start/End: Original strand, 31853306 - 31853605
Alignment:
| Q |
1120 |
tctcgctcttgcttcatccgatgatagtcctcacacttgtccatgcatattcgcttatcctcttcatcatattggcgttgttgtttgcattggtgtatac |
1219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31853306 |
tctcgctcttgcttcatccgatgatagtcctcacacttgtccatgcatattcccttatcctcttcatcatattggcgttgttgtttgcattggtgtatac |
31853405 |
T |
|
| Q |
1220 |
aagttttgagttctgggtcagtttcttctcttcctatagctatagctaagtttgaacataataaggctaagaggaagaaaagaaagatagctaaagaaag |
1319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31853406 |
aagttttgagttctgggtcagtttcttctcttcctatagctatagctaagtttgaacataataaggctaagaggaagaaaagaaagatagctaaagaaag |
31853505 |
T |
|
| Q |
1320 |
cttggttttcattgccatggtttcagcttattgtttgtatgacattgaagaatttgagcgtgtgtttgtgtattgatttatatgaaataagagggaaaca |
1419 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31853506 |
cttggttttcattgccatggtttcagcttatttgctctatgacattgaagaatttgagtgtgtgtttgtgtattaatttatatgaaataagagggaaaca |
31853605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 826 - 1061
Target Start/End: Original strand, 31853006 - 31853241
Alignment:
| Q |
826 |
ttggttgttttttaatacatacccttgacgttgaagaaaataacctcagaatcaaagtggtgtggtgaaacaaaagcatgtcctttagcttctaaaatgg |
925 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31853006 |
ttggttgttttttaatacatacccttgacgttgaagaaaataacctcagaatcaaagtggtgtggtgaaacaaaagcatgtcctttagcttctaaaatgg |
31853105 |
T |
|
| Q |
926 |
tcaaaccataattctcaaagtttctgagcagctttgatttttgatcaaacatgtttagagccataactctaccatcatctgtttctattttggtttcaaa |
1025 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31853106 |
tcaaaccataattctcaaagtttctaagcagctttgatttttgatcaaacatgtttagagccataactctaccatcatctgtatctattttggtttcaaa |
31853205 |
T |
|
| Q |
1026 |
atctctgtcttcaaaaacataaggattttcatcctc |
1061 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31853206 |
atctctgtcttcaaaaacataaggattttcatcctc |
31853241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University