View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21668_high_14 (Length: 335)
Name: NF21668_high_14
Description: NF21668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21668_high_14 |
 | |
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| [»] scaffold0689 (1 HSPs) |
| | |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 9230270 - 9229947
Alignment:
| Q |
1 |
aaaaaatctactaaattatgagttcaatacatcctgcttagcagaaagacggatattcctcgctcattatcagacaatcacttattcagaaaccccgtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9230270 |
aaaaaatctactaaattatgagttcaatacatcctgcttagcagaaagacggatattcctcgctcattatcagacaatcacttattcagaaaccccgtgt |
9230171 |
T |
|
| Q |
101 |
ggagctaatctttctgatttcccatctcatggaaaacccttttcgctccgcttagccctatcccctcctcggggtattttagtgataggttctataggaa |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9230170 |
ggagctaatcttttgcatttcccatctcatggaaaacccttttcgctccgcttaaccgtatcccctcctcggggtattttagtgataggttctataggaa |
9230071 |
T |
|
| Q |
201 |
ctggacgatcctatttggtcaaatatctagcgacaaactcctatgttcctttcattacagtatctgtaaacaagttcctggataactatcctaaaggttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9230070 |
ctggacgatcctatttggtcaaatatctagcgacaaactcctatgttcctttcattacagtatctgtaaacaagttcctggataactatcctaaaggttt |
9229971 |
T |
|
| Q |
301 |
tgatattaatgatctttttgatga |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
9229970 |
tgatattaatgatctttttgatga |
9229947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 18352317 - 18352639
Alignment:
| Q |
1 |
aaaaaatctactaaattatgagttcaatacatcctgcttagcagaaagacggatattcctcgctcattatcagacaatcacttattcagaaaccccgtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
18352317 |
aaaaaatctactaaattatgagttcaatacatcctgcttagcagaaagacggatattcctcgctcattatcagacaatcacttattcagaaaccccgtgt |
18352416 |
T |
|
| Q |
101 |
ggagctaatctttctgatttcccatctcatggaaaacccttttcgctccgcttagccctatcccctcctcggggtattttagtgataggttctataggaa |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
18352417 |
ggagctaatcttttgcatttcccatctcatggaaaacccttttcgctccgcttaaccgtatcccctcctcggg-tattttagtgataggttctataggaa |
18352515 |
T |
|
| Q |
201 |
ctggacgatcctatttggtcaaatatctagcgacaaactcctatgttcctttcattacagtatctgtaaacaagttcctggataactatcctaaaggttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18352516 |
ctggacgatcctatttggtcaaatatctagcgacaaactcctatgttcctttcattacagtatctgtaaacaagttcctggataactatcctaaaggttt |
18352615 |
T |
|
| Q |
301 |
tgatattaatgatctttttgatga |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
18352616 |
tgatattaatgatctttttgatga |
18352639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 2915981 - 2916306
Alignment:
| Q |
1 |
aaaaaatctactaaattatgagttcaatacatcctgcttagcagaaagacggatattcctcgctcattatcagacaatcacttattcagaaaccccgtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2915981 |
aaaaaatctactaaattatgagttcaatacatcctgcttagcagaaagacggatattcctcgctcattatcagacaatcacttattcagaaaccccgtgt |
2916080 |
T |
|
| Q |
101 |
ggagctaatctttctgatttcccatctcatggaaaacccttttcgctccgcttagccctatcccctcctcggggtattttagtgataggttctataggaa |
200 |
Q |
| |
|
|| ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
2916081 |
ggggctaatcgtttggatttcccatctcatggaaaaccctttttgctccgcttagccctatcccctcctaggggtattttagtgataggtttaataggaa |
2916180 |
T |
|
| Q |
201 |
ctggacgatcctatttggtcaaatatctagcgacaaactcctatgttcctttcattacagtatctgtaaacaagttcctggataactatcctaaaggttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |||| |
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|
| T |
2916181 |
ctggacgatcctatttggtcaaatatctagcgacaaactcctatgttcctttcattacagtatctctaaacaagtttatggataactatcataaatgttt |
2916280 |
T |
|
| Q |
301 |
tgatattaatgatctttttgatgatg |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2916281 |
tgatattaatgatctttttgatgatg |
2916306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 7709226 - 7708910
Alignment:
| Q |
9 |
tactaaattatgagttcaatacatcctgcttagcagaaagacggatattcctcgctcattatcagacaatcacttattcagaaaccccgtctggagctaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| || || || ||||| |
|
|
| T |
7709226 |
tactaaattatgagttcaatacatcctgcttagcagaaagacggacattcctcgctcattgtcaaacaatcacttattcagaaatcc-gtgtgaggctaa |
7709128 |
T |
|
| Q |
109 |
tctttctgatttcccatctcatggaaaacccttttcgctccgcttagccctatcccctcctcggggtattttagtgataggttctataggaactggacga |
208 |
Q |
| |
|
|| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || | |||||||||||||| |
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|
| T |
7709127 |
tcgtttggatttcccatctcatggaaaatccttttcgctccgcttagccctatcccctccaaggggtattttagtgatagattttgtaggaactggacga |
7709028 |
T |
|
| Q |
209 |
tcctatttggtcaaatatctagcgacaaactcctatgttcctttcattacagtatctgtaaacaagttcctggataactatcctaaaggttttgatatta |
308 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
7709027 |
tcctattcggtcaaatatctagcgacaaactcctatgttcctttaattatagtatctctaaacaagttcctggataaatatcctaaatgttttgatatta |
7708928 |
T |
|
| Q |
309 |
atgatctttttgatgatg |
326 |
Q |
| |
|
| ||||||||| |||||| |
|
|
| T |
7708927 |
aggatcttttttatgatg |
7708910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 2758 - 3045
Alignment:
| Q |
14 |
aattatgagttcaatacatcctgcttagcagaaagacggatattcctcgctcattatcagacaatcacttattcagaaaccccgtctggagctaatcttt |
113 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||| ||| |||||| || |
|
|
| T |
2758 |
aattatgagttcaatacatcctgtttagcagaaaggcggatattccttgctcattatcagacaatcacttattcacaaacttcgtgtggggctaatagtt |
2857 |
T |
|
| Q |
114 |
ctgatttcccatctcatggaaaacccttttcgctccgcttagccctatcccctcctcggggtattttagtgataggttctataggaactggacgatccta |
213 |
Q |
| |
|
| ||||||| |||| ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2858 |
ttcatttcccgtctcgtggaaaacccttttcgctccgcttagccctatctccctctaggggtattttagtgataggttctataggaaccggacgatccta |
2957 |
T |
|
| Q |
214 |
tttggtcaaatatctagcgacaaactcctatgttcctttcattacagtatctgtaaacaagttcctggataactatcctaaaggtttt |
301 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| | | |||||||||| |
|
|
| T |
2958 |
tttggtcaaatacctagcgacaaactcctatgttcctttcattacagtatttctgaacaagttcctggataacaagcttaaaggtttt |
3045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 197297 - 197063
Alignment:
| Q |
14 |
aattatgagttcaatacatcctgcttagcagaaagacggatattcctcgctcattatcagacaatcacttattcagaaaccccgtctggagctaatcttt |
113 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||| ||| |||||| || |
|
|
| T |
197297 |
aattatgagtttaatagatcctctttagcagaaagacgtatattccttgctcattatcagacaatcacttattcccaaacctcgtgtgggactaatcgtt |
197198 |
T |
|
| Q |
114 |
ctgatttcccatctcatggaaaacccttttcgctccgcttagccctatcccctcctcggggtattttagtgataggttctataggaactggacgatccta |
213 |
Q |
| |
|
| |||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197197 |
ttcatttaccatctcatggaaaacccttttcgttccgcttagccctatc---------gggtattttagtgataggttctataggaactggacgatccta |
197107 |
T |
|
| Q |
214 |
tttggtcaaatatctagcgacaaactcctatgttcctttcatta |
257 |
Q |
| |
|
|||||||||||| ||| ||| ||| | | || |||||||||||| |
|
|
| T |
197106 |
tttggtcaaatacctaacgaaaaattacgattttcctttcatta |
197063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 51049972 - 51050004
Alignment:
| Q |
274 |
gttcctggataactatcctaaaggttttgatat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
51049972 |
gttcctggataactatcctaaaggttttgatat |
51050004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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