View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21668_high_18 (Length: 320)

Name: NF21668_high_18
Description: NF21668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21668_high_18
NF21668_high_18
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-262)||(133909-134170)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-262)||(311737-311998)
[»] chr5 (15 HSPs)
chr5 (1-262)||(10485966-10486227)
chr5 (73-259)||(588325-588511)
chr5 (1-248)||(30509087-30509334)
chr5 (1-248)||(30549430-30549677)
chr5 (10-248)||(35121761-35121999)
chr5 (49-250)||(22094361-22094562)
chr5 (259-315)||(10486854-10486910)
chr5 (34-252)||(31865122-31865338)
chr5 (24-262)||(19506813-19507051)
chr5 (181-250)||(21084708-21084777)
chr5 (194-261)||(20207977-20208044)
chr5 (175-242)||(33385211-33385278)
chr5 (169-250)||(36256602-36256683)
chr5 (194-262)||(6050055-6050123)
chr5 (49-101)||(25591315-25591367)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-262)||(3612-3873)
[»] chr4 (20 HSPs)
chr4 (1-262)||(7662372-7662633)
chr4 (4-250)||(3129062-3129289)
chr4 (1-190)||(23279690-23279879)
chr4 (113-250)||(23872653-23872790)
chr4 (49-250)||(19115263-19115464)
chr4 (113-250)||(55299448-55299585)
chr4 (49-250)||(19648522-19648723)
chr4 (113-250)||(29552977-29553114)
chr4 (124-250)||(20675862-20675988)
chr4 (259-315)||(8655007-8655063)
chr4 (115-250)||(26694755-26694890)
chr4 (259-315)||(3129913-3129969)
chr4 (43-262)||(34976756-34976975)
chr4 (113-250)||(8935901-8936038)
chr4 (259-315)||(47541075-47541131)
chr4 (43-262)||(42779065-42779284)
chr4 (172-265)||(2072352-2072445)
chr4 (259-315)||(7663173-7663229)
chr4 (169-250)||(40688908-40688989)
chr4 (170-250)||(19162402-19162482)
[»] chr3 (13 HSPs)
chr3 (1-262)||(30166387-30166648)
chr3 (28-262)||(24925776-24926010)
chr3 (124-250)||(6175664-6175790)
chr3 (112-261)||(46907845-46907994)
chr3 (115-262)||(21739666-21739813)
chr3 (259-305)||(49731866-49731912)
chr3 (115-248)||(10868473-10868606)
chr3 (115-250)||(42674616-42674751)
chr3 (114-259)||(43120851-43120996)
chr3 (172-250)||(53942073-53942151)
chr3 (155-262)||(15480976-15481083)
chr3 (157-242)||(962383-962468)
chr3 (157-261)||(23819381-23819485)
[»] chr2 (8 HSPs)
chr2 (1-262)||(45422335-45422596)
chr2 (24-262)||(13551397-13551635)
chr2 (24-262)||(11233576-11233814)
chr2 (24-265)||(9668093-9668334)
chr2 (24-250)||(28399637-28399863)
chr2 (113-262)||(25380569-25380719)
chr2 (53-250)||(15018504-15018701)
chr2 (163-250)||(26147042-26147129)
[»] chr7 (13 HSPs)
chr7 (71-265)||(46626634-46626828)
chr7 (10-250)||(12378041-12378281)
chr7 (49-250)||(45993403-45993604)
chr7 (115-262)||(36227329-36227476)
chr7 (113-250)||(13440885-13441022)
chr7 (49-262)||(34232516-34232729)
chr7 (1-283)||(43572335-43572617)
chr7 (259-315)||(46623855-46623911)
chr7 (169-250)||(45164779-45164860)
chr7 (142-250)||(41340376-41340484)
chr7 (259-314)||(15653639-15653694)
chr7 (163-250)||(41804985-41805072)
chr7 (220-262)||(4078092-4078134)
[»] scaffold0418 (2 HSPs)
scaffold0418 (85-262)||(8419-8596)
scaffold0418 (259-315)||(7825-7881)
[»] chr8 (15 HSPs)
chr8 (109-262)||(7453167-7453320)
chr8 (49-250)||(4987177-4987378)
chr8 (113-250)||(16375279-16375416)
chr8 (259-315)||(19384644-19384700)
chr8 (259-315)||(7452502-7452558)
chr8 (194-262)||(36157969-36158037)
chr8 (115-250)||(43611369-43611504)
chr8 (115-262)||(43612363-43612510)
chr8 (115-261)||(23942903-23943049)
chr8 (23-103)||(7556052-7556132)
chr8 (177-265)||(17700292-17700380)
chr8 (163-250)||(12332675-12332762)
chr8 (163-250)||(36493208-36493295)
chr8 (31-132)||(43247629-43247730)
chr8 (215-259)||(6901755-6901799)
[»] chr6 (14 HSPs)
chr6 (24-262)||(26206148-26206386)
chr6 (113-250)||(15674659-15674796)
chr6 (24-262)||(13086358-13086596)
chr6 (113-250)||(33640744-33640881)
chr6 (115-229)||(11469415-11469529)
chr6 (259-315)||(33630247-33630303)
chr6 (175-262)||(17605572-17605659)
chr6 (172-250)||(25351050-25351128)
chr6 (46-262)||(649182-649398)
chr6 (175-242)||(21629360-21629427)
chr6 (155-250)||(26514552-26514647)
chr6 (169-250)||(10362973-10363054)
chr6 (205-254)||(19616147-19616196)
chr6 (259-303)||(1683202-1683246)
[»] chr1 (18 HSPs)
chr1 (24-262)||(5497901-5498139)
chr1 (113-250)||(48072602-48072739)
chr1 (113-250)||(32352488-32352625)
chr1 (24-262)||(20796475-20796713)
chr1 (24-242)||(39431121-39431339)
chr1 (64-250)||(25504119-25504305)
chr1 (46-262)||(17708873-17709089)
chr1 (259-315)||(21528311-21528367)
chr1 (259-315)||(48265652-48265708)
chr1 (112-262)||(26721448-26721598)
chr1 (157-262)||(49264185-49264290)
chr1 (259-315)||(36929317-36929373)
chr1 (208-262)||(22191053-22191107)
chr1 (157-262)||(7395940-7396045)
chr1 (181-250)||(44890255-44890324)
chr1 (181-250)||(45271068-45271137)
chr1 (259-303)||(36305946-36305990)
chr1 (210-254)||(43943750-43943794)
[»] scaffold0179 (2 HSPs)
scaffold0179 (194-262)||(8347-8415)
scaffold0179 (194-262)||(13281-13349)
[»] scaffold0094 (1 HSPs)
scaffold0094 (184-250)||(26127-26193)


Alignment Details
Target: scaffold0029 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 133909 - 134170
Alignment:
Q  1 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  133909 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 134008  T
Q  101 cacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtact 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134009 cacgtcggcttagtttttgggaccctattgtgcatcgaataaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtact 134108  T
Q  201 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  134109 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagtgccccatcag 134170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 311737 - 311998
Alignment:
Q  1 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  311737 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 311836  T
Q  101 cacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtact 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  311837 cacgtcggcttagtttttgggaccctattgtgcatcgaataaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtact 311936  T
Q  201 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  311937 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagtgccccatcag 311998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 10485966 - 10486227
Alignment:
Q  1 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  10485966 aatatctcggattcttggctttgtgaggcagcttccgtgttgagctgcaaagtgggtaaggttcctttcttgtacttgggcttgcctattgggggtaatc 10486065  T
Q  101 cacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtact 200  Q
    | ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||    
T  10486066 cgcgtcgtcttagtttttgggaccctattgtgcatcgaatcaaagctagacttacgggttggaatagccggtttctttcctttggaggacgtttggttct 10486165  T
Q  201 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  10486166 tttaaaatctgtcttgacttctctgcctgtctatgccatttctttcttcaaagctccatcag 10486227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 73 - 259
Target Start/End: Complemental strand, 588511 - 588325
Alignment:
Q  73 tacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggt 172  Q
    ||||| |||||||||||||| |||||||  || || ||||| |||||||||||||||||| |||||||  || ||||||||||| ||||||||||||| |    
T  588511 tacttaggcttacctattggcggtaatctgcggcgtcttagcttttgggaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgat 588412  T
Q  173 ttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccat 259  Q
    |||| || || ||||| || ||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||| ||| ||||    
T  588411 ttctctctttcggtggccgcttggtacttctaaaatctgtcttgacctctctgcctgtctatgctctttgtttcttcaaagctccat 588325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 30509087 - 30509334
Alignment:
Q  1 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 100  Q
    |||||||| ||||||||| |  ||||||| ||||||||||||||||| ||||| ||||||  |||||| |||||  | || || ||||||||||||||||    
T  30509087 aatatctctgattcttggttgagtgaggctgcttcggtgttgagctgtaaagtaggtaagattccttttttgtatctaggtttgcctattgggggtaatc 30509186  T
Q  101 cacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtact 200  Q
    | ||  | |||   |||||||| ||| | ||| |||| || ||||||||| |  |||| ||||||||||||||||| || |||||||| || ||| | ||    
T  30509187 cgcggagactttcgttttgggatcctgtcgtgaatcgtattaaatctagattgtcggggtggaatagccggtttctctcttttggtggtcgcttgatcct 30509286  T
Q  201 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttctt 248  Q
    | | ||| | || ||||||||||||||||||||||| ||||| |||||    
T  30509287 tctgaaagccgtgttgacttctctgcctgtctatgctctttccttctt 30509334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 30549430 - 30549677
Alignment:
Q  1 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 100  Q
    |||||||| ||||||||| |  ||||||| ||||||||||||||||| ||||| ||||||  |||||| |||||  | || || ||||||||||||||||    
T  30549430 aatatctctgattcttggttgagtgaggctgcttcggtgttgagctgtaaagtaggtaagattccttttttgtatctaggtttgcctattgggggtaatc 30549529  T
Q  101 cacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtact 200  Q
    | ||  | |||   |||||||| ||| | ||| |||| || ||||||||| |  |||| ||||||||||||||||| || |||||||| || ||| | ||    
T  30549530 cgcggagactttcgttttgggatcctgtcgtgaatcgtattaaatctagattgtcggggtggaatagccggtttctctcttttggtggtcgcttgatcct 30549629  T
Q  201 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttctt 248  Q
    | | ||| | || ||||||||||||||||||||||| ||||| |||||    
T  30549630 tctgaaagccgtgttgacttctctgcctgtctatgctctttccttctt 30549677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 35121761 - 35121999
Alignment:
Q  10 gattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggc 109  Q
    ||||||||| |  ||||||| || || ||||| || || ||||||||||||| |||||| |||||| |  | || ||||||||||||||||| ||  | |    
T  35121761 gattcttggttgagtgaggcggcctcagtgttaagttgtaaagtgggtaaggttccttttttgtacctatgtttgcctattgggggtaatccgcggagac 35121860  T
Q  110 ttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatc 209  Q
    ||   |||||||| ||| ||||| || | || |||||||||||  |||| || |||||||| ||||| || |||||||| || ||| | ||  |||||||    
T  35121861 tttagttttgggatcctgttgtgaatagtattaaatctagactgtcgggatgcaatagccgatttctctcgtttggtggtcgcttgattctcctaaaatc 35121960  T
Q  210 tgtcttgacttctctgcctgtctatgccctttctttctt 248  Q
     || ||||||||||||||||||||||| ||||| |||||    
T  35121961 agttttgacttctctgcctgtctatgctctttccttctt 35121999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 250
Target Start/End: Original strand, 22094361 - 22094562
Alignment:
Q  49 aaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatcta 148  Q
    ||||||||||||| ||||||||| ||||||||  | || ||||| |||||||| || ||  |  |||| ||||| ||| ||||| |||| || ||| |||    
T  22094361 aaagtgggtaaggttcctttcttatacttgggtatgccgattggtggtaatcctcgacgtttgtgtttctgggatcctgttgtgaatcgtattaaagcta 22094460  T
Q  149 gacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttctt 248  Q
    ||||  ||||||||||||| || || || || |||||||| |  ||||| ||| | ||| |||||||||||||| ||||||||||||| ||||| |||||    
T  22094461 gactgtcgggttggaatagtcgtttcctctcttttggtggccatttggttcttctcaaagctgtcttgacttctttgcctgtctatgctctttccttctt 22094560  T
Q  249 ca 250  Q
    ||    
T  22094561 ca 22094562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 10486854 - 10486910
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||    
T  10486854 tcagatagatgggtttggcttcctgctccgtcagatggatacactgttagtggtgct 10486910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 252
Target Start/End: Complemental strand, 31865338 - 31865122
Alignment:
Q  34 tcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgc 133  Q
    ||||||||||| || ||||||||||||| |||||||  ||| |||||||| | ||||||||||||||  ||  | ||||  ||||| ||||||||||||     
T  31865338 tcggtgttgagttgtaaagtgggtaaggttcctttc--gtatttgggcttgcttattgggggtaatctgcggagacttaacttttgagaccctattgtga 31865241  T
Q  134 atcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtcta 233  Q
    |||| || ||||||||  |  |||||||||| ||||| ||||| || ||||| || || ||||| ||  | |||||| |  |||| ||| || |||||||    
T  31865240 atcgtattaaatctaggttgtcgggttggaaaagccgatttctctcttttggaggccgcttggttctacttaaatctattctgacctctttgtctgtcta 31865141  T
Q  234 tgccctttctttcttcaga 252  Q
    |||  |||| |||||||||    
T  31865140 tgctttttccttcttcaga 31865122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 19507051 - 19506813
Alignment:
Q  24 tgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtac-ttgggcttacctattgggggtaatccacgtcggcttagtttttggga 122  Q
    |||||| ||||| || ||||  || |||||||| |||  ||||||| ||||| |||| ||| ||||||||||||||||| |||||  ||   |||||| |    
T  19507051 tgaggcggcttcagtattgaattgtaaagtgggcaagattcctttcatgtaccttggtctt-cctattgggggtaatccgcgtcgtttttcgttttggaa 19506953  T
Q  123 ccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttct 222  Q
    |||| ||||| ||  ||| |||||||||||  | |||||||||||||||||| | || || ||||| || || || || || ||| | ||  ||||||||    
T  19506952 ccctgttgtgaataaaattaaatctagactgtcaggttggaatagccggtttttatcgttcggtggtcgcttagttctcttgaaagcagttctgacttct 19506853  T
Q  223 ctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
     ||| ||||||||| ||||| ||||| | ||| |||||||    
T  19506852 ttgcttgtctatgctctttccttctttaaagctccatcag 19506813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 21084777 - 21084708
Alignment:
Q  181 tttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||||| ||||| || ||| |||| ||||||||||| ||||| ||||||||||| ||||| |||||||    
T  21084777 tttggtggtcggttagtccttctaaagtctgtcttgacctctctacctgtctatgctctttccttcttca 21084708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 20207977 - 20208044
Alignment:
Q  194 tggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatca 261  Q
    |||| |||||||| |||||| | || ||||||||||||||||| ||||| ||||||| ||| ||||||    
T  20207977 tggttcttttaaagtctgtcctaacctctctgcctgtctatgcgctttccttcttcaaagctccatca 20208044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 33385211 - 33385278
Alignment:
Q  175 ctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttc 242  Q
    |||||||||||||| || ||| ||||| | ||||||||||||||| | || ||||||||||| |||||    
T  33385211 ctttcctttggtggtcgcttgatacttctcaaatctgtcttgactgcgcttcctgtctatgcactttc 33385278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 36256683 - 36256602
Alignment:
Q  169 cggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    ||||||||||| ||||| || || ||| | |||||||| |||||||||||  | || ||||||||||| ||||| |||||||    
T  36256683 cggtttctttcttttggaggtcgcttgattcttttaaagtctgtcttgaccgcgctacctgtctatgctctttccttcttca 36256602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 6050123 - 6050055
Alignment:
Q  194 tggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    |||| |||||||| |||||  |||| || |||||||||||||| ||||| ||||||| ||| |||||||    
T  6050123 tggttcttttaaagtctgttctgacctcgctgcctgtctatgcgctttccttcttcaaagctccatcag 6050055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 25591367 - 25591315
Alignment:
Q  49 aaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatcc 101  Q
    |||||||| |||| || |||||||||||||||| | |||||||| ||||||||    
T  25591367 aaagtgggaaaggttcatttcttgtacttgggcctgcctattggtggtaatcc 25591315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3612 - 3873
Alignment:
Q  1 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| || ||||||||||| |    
T  3612 aatatctcggattcttggctttgtgaggcagcttcggttttgagttgcaaagtgggtaaggttcctttcttgtacttgggcttgccaattgggggtaacc 3711  T
Q  101 cacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtact 200  Q
    | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||    
T  3712 cgcgtcggcttagtttttgggaccatattgtgcatcgaatcaaatctagacttacgggttggaatagctggtttctttcctttggcggacatttggtact 3811  T
Q  201 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  3812 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcaaagctccatcag 3873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 7662372 - 7662633
Alignment:
Q  1 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 100  Q
    ||||| || |||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||  ||||||||||||| ||||||||||||||||    
T  7662372 aatatttctgattcttggctttgtgaggcagcttcagtgctgagctgtaaagtgggtaaggttccttttatgtacttgggcttgcctattgggggtaatc 7662471  T
Q  101 cacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtact 200  Q
    | ||||| |||||||||||||| ||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||    
T  7662472 cgcgtcgtcttagtttttgggatcctattgtgaatcgaattaaagctagacttatgggttggaatagccggtttctttcctttggaggacgtttggttct 7662571  T
Q  201 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  7662572 gttaaaatctgtcttgacttctctacctgtctatgccctttctttcttcaaagctccatcag 7662633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 3129062 - 3129289
Alignment:
Q  4 atctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccac 103  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||   |    
T  3129062 atctcggactcttggctttgtgaggcagcttcggtgttgagttgcaaagtgggtaaggttcctttcttgtacttgggcttgcctattgggggtaatttgc 3129161  T
Q  104 gtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtactttt 203  Q
     |||||||||||||||||||||||||                   | ||||||||||||||| |||| |||||||||||||| || || |||||||||||    
T  3129162 atcggcttagtttttgggaccctatt-------------------ggcttacgggttggaattgccgatttctttcctttggaggtcgtttggtactttt 3129242  T
Q  204 aaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3129243 aaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 3129289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 23279879 - 23279690
Alignment:
Q  1 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 100  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||    
T  23279879 aatatctctgattcttggctttgtgaggcagcctcggtgttgagttgcaaagtgggtaaggttcctttcctgtacttgggcttgcctattaggggtaatc 23279780  T
Q  101 cacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggac 190  Q
    ||||||| ||||||||||  ||||||||| || ||||||| ||| ||||||||||| ||||||||| ||||||||| |||||||| ||||    
T  23279779 cacgtcgtcttagtttttatgaccctattttgaatcgaattaaaactagacttacgagttggaataaccggtttctctcctttggcggac 23279690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 23872653 - 23872790
Alignment:
Q  113 gtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgt 212  Q
    |||| ||||| ||||||||| |||| || |||||||||||  ||||||||||||| |||||||| || |||||||| || ||||| ||  | ||||||||    
T  23872653 gtttctgggaacctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgt 23872752  T
Q  213 cttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||| ||||||||||||||||| ||||| |||||||    
T  23872753 cttgacctctctgcctgtctatgcactttccttcttca 23872790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 250
Target Start/End: Complemental strand, 19115464 - 19115263
Alignment:
Q  49 aaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatcta 148  Q
    |||||||||||||  || ||||| |||||||| || || |||||||||||||| |||||  |  |||| ||||| ||||||||| ||||  | ||| ||     
T  19115464 aaagtgggtaaggtgccattcttatacttgggtttgccgattgggggtaatcctcgtcgtttgtgtttctgggatcctattgtgaatcgtgttaaagctc 19115365  T
Q  149 gacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttctt 248  Q
    ||||  ||||||||||||| || || || || |||||||| || ||||| ||| | ||| ||||||||||||||||| |||||||||| ||||| |||||    
T  19115364 gactgtcgggttggaatagtcgtttcctctcttttggtggccgcttggttcttctcaaagctgtcttgacttctctgtctgtctatgcactttccttctt 19115265  T
Q  249 ca 250  Q
    ||    
T  19115264 ca 19115263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 55299585 - 55299448
Alignment:
Q  113 gtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgt 212  Q
    |||| ||||| ||||||||| |||| || ||||||||| |  ||||||||||||| |||||||| || |||||||| || ||||| ||  | ||||||||    
T  55299585 gtttctgggaacctattgtgaatcgtattaaatctagattgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgt 55299486  T
Q  213 cttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||| ||||||||||||||||| ||||| |||||||    
T  55299485 cttgacctctctgcctgtctatgcactttccttcttca 55299448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 250
Target Start/End: Complemental strand, 19648723 - 19648522
Alignment:
Q  49 aaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatcta 148  Q
    |||||||| ||||  |||||||| ||||||||| | || ||||| |||||||| |||||  |  |||| ||||||||| ||||| |||| || |||||||    
T  19648723 aaagtgggaaaggtgcctttcttatacttgggcatgccgattggtggtaatcctcgtcgtttgtgtttctgggaccctgttgtgaatcgtataaaatcta 19648624  T
Q  149 gacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttctt 248  Q
    || |  | ||||||||||| || || || || |||| ||| || ||||| ||| | |||||||| ||||| ||||| ||||||||||| |||||||||||    
T  19648623 gagtgtcaggttggaatagtcgtttcctctcttttgctggccgtttggttcttctcaaatctgtgttgacctctctacctgtctatgctctttctttctt 19648524  T
Q  249 ca 250  Q
    ||    
T  19648523 ca 19648522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 29552977 - 29553114
Alignment:
Q  113 gtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgt 212  Q
    |||||||||| ||||||||| |||| || | | |||||||  |||||||||||||  | || ||||| |||||||| || ||||| ||| | ||| ||||    
T  29552977 gtttttgggatcctattgtgaatcgtattagaactagactgtcgggttggaatagttgtttcctttcttttggtggtcgtttggttcttctcaaagctgt 29553076  T
Q  213 cttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  29553077 cttgacttctctgcctgtctatgctctttccttcttca 29553114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 250
Target Start/End: Complemental strand, 20675988 - 20675862
Alignment:
Q  124 cctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctc 223  Q
    ||||||||| |||| || |||||||||||  ||||||| ||||| |||||| | || |||||||| || ||||| ||  | |||||||||||||| ||||    
T  20675988 cctattgtgaatcgtattaaatctagactgtcgggttgtaatagtcggtttttctcttttggtggtcgcttggttctactcaaatctgtcttgacctctc 20675889  T
Q  224 tgcctgtctatgccctttctttcttca 250  Q
    ||||||||||||| ||||| |||||||    
T  20675888 tgcctgtctatgcactttcattcttca 20675862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 8655007 - 8655063
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  8655007 tcagatagatgggtttggcttcctgctccgtcagagggatacactgttagtggtgct 8655063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 26694890 - 26694755
Alignment:
Q  115 ttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtct 214  Q
    |||||||| || || ||| |||| || ||||||||||| ||||||||||||||  | ||||| || |||||||| || ||| | ||  | ||||| ||      
T  26694890 ttttgggaaccgatcgtgaatcgcattaaatctagactgacgggttggaatagtagatttctctcttttggtggccgcttgattctcctcaaatcagttc 26694791  T
Q  215 tgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||| |||||||||||||||||||||||||||||||    
T  26694790 tgacatctctgcctgtctatgccctttctttcttca 26694755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 3129913 - 3129969
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||    
T  3129913 tcagatagatgggtttggcttcctgctccgtcagatggatacattgttagtggtgct 3129969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 262
Target Start/End: Complemental strand, 34976975 - 34976756
Alignment:
Q  43 agctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatca 142  Q
    |||||||||||||||||||  |  || |||||||||||  | ||||||||| | ||| | || ||  | ||||||||||| |||||||||  ||| || |    
T  34976975 agctgcaaagtgggtaaggtgctgtttttgtacttgggtatgcctattgggagaaattctcggcgattgagtttttgggaacctattgtgagtcgcataa 34976876  T
Q  143 aatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttc 242  Q
    || ||||  |  | ||||||||||| |  ||| | || ||||| || || ||||| |||||||| |||||| |||| ||||||||||| ||||| |||||    
T  34976875 aagctaggttgtctggttggaatagtcattttttatcttttggcggccgtttggttcttttaaagtctgtcctgacctctctgcctgtttatgcgctttc 34976776  T
Q  243 tttcttcagagccccatcag 262  Q
     ||||||| ||| |||||||    
T  34976775 cttcttcaaagctccatcag 34976756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 8936038 - 8935901
Alignment:
Q  113 gtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgt 212  Q
    |||| ||||||||| ||||| |||| || ||| |||||||  | ||||||||||| || || || || |||||| | || ||||| ||| | ||||||||    
T  8936038 gtttctgggaccctgttgtgaatcgtataaaaactagactgtcaggttggaatagtcgtttcctctcttttggttgccgtttggttcttctcaaatctgt 8935939  T
Q  213 cttgacttctctgcctgtctatgccctttctttcttca 250  Q
     ||||| |||||| |||||||||| ||||| |||||||    
T  8935938 gttgacctctctgtctgtctatgctctttccttcttca 8935901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 47541131 - 47541075
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    |||||||||| ||||||| |||||||||||||||| |||||||||||  ||||||||    
T  47541131 tcagatagataggtttggtttcctgctccgtcagatggatacactgttagtggtgct 47541075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 262
Target Start/End: Complemental strand, 42779284 - 42779065
Alignment:
Q  43 agctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatca 142  Q
    |||||||||||||||||||  || || |||||||||||| | ||||||||||| ||| | |  ||  | ||||||||||| ||| ||||| |||| || |    
T  42779284 agctgcaaagtgggtaaggtgccgtttttgtacttgggcatgcctattgggggaaattctctgcgtttgagtttttgggaaccttttgtgaatcgcatta 42779185  T
Q  143 aatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttc 242  Q
    || ||||  |  | || |||||||| || ||||| || ||||| || ||  ||||  | || || ||||| ||||| |||||| |||||||||| |||||    
T  42779184 aagctaggttgtctgggtggaatagtcgttttctatcttttggcggccgtctggttttgttgaagtctgttttgacctctctgtctgtctatgcgctttc 42779085  T
Q  243 tttcttcagagccccatcag 262  Q
     ||||||| ||| |||||||    
T  42779084 cttcttcaaagctccatcag 42779065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 2072445 - 2072352
Alignment:
Q  172 tttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcagata 265  Q
    ||||| ||||| || || |||||||| ||| | |||| |||| |||| ||||||| ||||||||| ||||||||||||| ||| || |||||||    
T  2072445 tttctctccttcggaggccggttggttcttctcaaatttgtcatgacctctctgcatgtctatgctctttctttcttcaaagctccgtcagata 2072352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 7663173 - 7663229
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    ||||||| ||||||||||||||||||||| | ||| |||||||||||  ||||||||    
T  7663173 tcagatacatgggtttggcttcctgctcctttagatggatacactgttcgtggtgct 7663229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 40688989 - 40688908
Alignment:
Q  169 cggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    ||||||||||| ||||| || || ||| | |||||||| |||||||||||| | ||  |||||||||| ||||| |||||||    
T  40688989 cggtttctttcttttggaggtcgcttgattcttttaaagtctgtcttgactgcgctatctgtctatgctctttccttcttca 40688908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 19162402 - 19162482
Alignment:
Q  170 ggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||||||||||||| || || ||| | |||||||| | |||||||||  | || ||||||||||| ||||| |||||||    
T  19162402 ggtttctttcctttggaggtcgcttgattcttttaaagtatgtcttgaccgcgctacctgtctatgctctttccttcttca 19162482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 30166387 - 30166648
Alignment:
Q  1 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 100  Q
    ||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||  ||||||||||||| ||||||||||| ||||    
T  30166387 aatatttctgattcttggctttgtgaggcagcttcagtgttgagctgtaaagtgggtaaggttccttttatgtacttgggcttgcctattgggggaaatc 30166486  T
Q  101 cacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtact 200  Q
    | ||||| |||||||||||||| ||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||    
T  30166487 cgcgtcgtcttagtttttgggatcctattgtgaatcgaattaaagctagacttatgggttggaatagccggtttctttcctttggaggacgtttggttct 30166586  T
Q  201 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  30166587 gttaaaatctgtcttgacttctctacctgtctatgccctttctttcttcaaagctccatcag 30166648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 262
Target Start/End: Original strand, 24925776 - 24926010
Alignment:
Q  28 gcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggacccta 127  Q
    |||||||||||||||||||||||||| || |    ||||||  ||||| | ||||| |||||||||||||||||     | |||   |||||||| ||||    
T  24925776 gcagcttcggtgttgagctgcaaagttggaacaattccttttctgtacctaggcttgcctattgggggtaatccgtagagactttccttttgggatccta 24925875  T
Q  128 ttgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcc 227  Q
    ||||| |||| || |||||||||||  ||||||||||||  |||||||| || ||||| || || ||| | ||  | ||||| || ||||||||||||||    
T  24925876 ttgtgaatcgtataaaatctagactgtcgggttggaataaacggtttctctcttttggcggtcgcttgatcctccttaaatcggttttgacttctctgcc 24925975  T
Q  228 tgtctatgccctttctttcttcagagccccatcag 262  Q
    ||||||||| ||||||||||||| ||| |||||||    
T  24925976 tgtctatgcactttctttcttcaaagctccatcag 24926010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 250
Target Start/End: Original strand, 6175664 - 6175790
Alignment:
Q  124 cctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctc 223  Q
    ||||||||| |||  || |||||||||||  ||||||||||||| |||||||| || |||||||| || ||||| ||  | |||||||||||||| ||||    
T  6175664 cctattgtgaatcatattaaatctagactgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgtcttgacatctc 6175763  T
Q  224 tgcctgtctatgccctttctttcttca 250  Q
    ||||||||||||| ||||| |||||||    
T  6175764 tgcctgtctatgcactttccttcttca 6175790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 261
Target Start/End: Original strand, 46907845 - 46907994
Alignment:
Q  112 agtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctg 211  Q
    ||||||||||| |||||| || |||| || ||| |||||||  | ||||||||||| || |||| ||||||| | || || ||||| |||||||| ||||    
T  46907845 agtttttgggatcctattttgaatcgtattaaagctagactgtctggttggaatagtcgatttcattccttttgcggccgtttggttcttttaaagtctg 46907944  T
Q  212 tcttgacttctctgcctgtctatgccctttctttcttcagagccccatca 261  Q
    |  |||| ||||||||| ||||||| ||||| ||||||| ||| ||||||    
T  46907945 ttctgacctctctgcctatctatgctctttccttcttcaaagctccatca 46907994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 21739666 - 21739813
Alignment:
Q  115 ttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtct 214  Q
    |||||||||||| ||||| |  |||| |||||||||||  | |||||||||||||||||||| || || ||||| || ||||| ||||| ||| | ||      
T  21739666 ttttgggaccctgttgtgaacagaattaaatctagactgtcaggttggaatagccggtttctatcgttcggtggtcgcttggtccttttgaaagcagttc 21739765  T
Q  215 tgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
     ||||||| ||||||||||||| ||||| ||||| | ||| |||||||    
T  21739766 cgacttctttgcctgtctatgctctttccttctttaaagctccatcag 21739813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 49731866 - 49731912
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgt 305  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  49731866 tcagatagatgggtttggcttcctgctccgtcagatggatacactgt 49731912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 10868606 - 10868473
Alignment:
Q  115 ttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtct 214  Q
    ||||||||| || ||||| || |||| ||||||||| |  |||||||||||||||||||||| || |||||||| || ||||| ||| | ||| | ||      
T  10868606 ttttgggactctgttgtgaatagaattaaatctagaatgtcgggttggaatagccggtttctctcgtttggtggtcgcttggtccttatgaaagcagttc 10868507  T
Q  215 tgacttctctgcctgtctatgccctttctttctt 248  Q
    |||| ||| ||||||| ||||| ||||| |||||    
T  10868506 tgacatctttgcctgtatatgctctttccttctt 10868473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 250
Target Start/End: Original strand, 42674616 - 42674751
Alignment:
Q  115 ttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtct 214  Q
    |||||||| || || ||| |||| || ||||||||||| ||| ||||||||||  | ||||| || |||||||| || ||| | ||  | ||||| ||      
T  42674616 ttttgggaaccgatcgtgaatcgcattaaatctagactgacgagttggaatagtagatttctctcttttggtggccgcttgattctcctcaaatcagttc 42674715  T
Q  215 tgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||| ||||||||||||||||| |||||||||||||    
T  42674716 tgacatctctgcctgtctatgctctttctttcttca 42674751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 259
Target Start/End: Original strand, 43120851 - 43120996
Alignment:
Q  114 tttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctt-tcctttggtggacggttggtacttttaaaatctgt 212  Q
    ||||||||| ||||||||| |||  || |||| ||||||  | ||||||||||| || |||||| || ||||| || ||  |||| ||||||||||||||    
T  43120851 tttttgggatcctattgtgaatcagattaaatttagactgtctggttggaatagtcg-tttcttatcttttggcggtcgcctggttcttttaaaatctgt 43120949  T
Q  213 cttgacttctctgcctgtctatgccctttctttcttcagagccccat 259  Q
    | |||| |||||| ||||||||||  |||| ||||||| ||| ||||    
T  43120950 cctgacctctctgtctgtctatgcgttttccttcttcaaagctccat 43120996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 53942151 - 53942073
Alignment:
Q  172 tttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    ||||| |||| |||||| |||||||| |||||||| ||||||||||| || || | ||||||||| ||||| |||||||    
T  53942151 tttctatcctatggtggtcggttggtccttttaaagtctgtcttgacctcgcttcttgtctatgctctttccttcttca 53942073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 15480976 - 15481083
Alignment:
Q  155 cgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagc 254  Q
    |||||||||||||  | |||||||| |||||||| || ||| | ||  | ||| ||||  |||| ||||||| ||||||||| ||||||||||||| |||    
T  15480976 cgggttggaatagtagatttctttcttttggtggccgtttgatcctcctcaaagctgttctgacatctctgcttgtctatgctctttctttcttcaaagc 15481075  T
Q  255 cccatcag 262  Q
     |||||||    
T  15481076 tccatcag 15481083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 962383 - 962468
Alignment:
Q  157 ggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttc 242  Q
    |||||| |||| ||||| ||||| |||||||| |||||| | ||| | ||||||||| ||||| | || ||||||||||| |||||    
T  962383 ggttggcatagtcggttcctttcttttggtggccggttgatccttctcaaatctgtcctgactgcacttcctgtctatgctctttc 962468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 23819485 - 23819381
Alignment:
Q  157 ggttggaatagccggtttctt-tcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagcc 255  Q
    ||||||||||| | ||||||| || |||||||| ||  |||| || ||||| |||||| |||| ||||||||||| ||||| ||||| ||||||| |||     
T  23819485 ggttggaatagtc-gtttcttatcttttggtggtcgcatggttctcttaaagtctgtcctgacctctctgcctgtatatgcgctttccttcttcaaagct 23819387  T
Q  256 ccatca 261  Q
    ||||||    
T  23819386 ccatca 23819381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 45422596 - 45422335
Alignment:
Q  1 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 100  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||||||  ||||||||||||  ||||||||||||||||    
T  45422596 aatatttctgattcttggctttgtgaggcaacttcggtgttgagctacaaagtgggtagggttccttttatgtacttgggctagcctattgggggtaatc 45422497  T
Q  101 cacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtact 200  Q
    | ||||| |||||||||||||| ||||||||| |||| || ||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||    
T  45422496 cgcgtcgtcttagtttttgggatcctattgtgaatcgtattaaagctagacttatgggttggaatagccggtttctttcctttggaggacgtttggttct 45422397  T
Q  201 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  45422396 attaaaatctgtcttgacttctctacctgtctatgccctttctttcttcaaagctccatcag 45422335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 13551635 - 13551397
Alignment:
Q  24 tgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggac 123  Q
    |||||| ||||| |||||||| || ||||| ||||| | ||||||||||||  ||||  | |||||||| |||||||| ||  |  |  |||| |||||     
T  13551635 tgaggctgcttccgtgttgagttgtaaagtaggtaacgttcctttcttgtatctgggtatgcctattggtggtaatcctcgaagattgtgtttctgggaa 13551536  T
Q  124 cctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctc 223  Q
    ||||||||| |||| || |||||||||||  | ||||||||||| |||||||| || |||||||| || ||||| ||| | ||||||||| |||| |||     
T  13551535 cctattgtgaatcgtattaaatctagactgtcaggttggaatagtcggtttctatcttttggtggtcgcttggttcttctcaaatctgtcctgacctctt 13551436  T
Q  224 tgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    ||||||||||||| ||||| ||||||| ||| |||||||    
T  13551435 tgcctgtctatgcactttccttcttcaaagctccatcag 13551397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 24 - 262
Target Start/End: Original strand, 11233576 - 11233814
Alignment:
Q  24 tgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggac 123  Q
    |||||| ||||||||||| || || |||||| | |||  ||||||| |||| || || |||||||| ||||| ||||| ||||| |||   |||||||||    
T  11233576 tgaggcggcttcggtgttaagttgtaaagtgagcaagattcctttcatgtattttggtttacctatagggggcaatccgcgtcgtctttcgttttgggac 11233675  T
Q  124 cctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctc 223  Q
    ||| ||||| || |||| |||||||||||  | |||||||||| ||||||||| || || ||||| || ||||| ||||| ||| | ||  ||||||||     
T  11233676 cctgttgtgaatagaattaaatctagactgtcaggttggaataaccggtttctctcgttcggtggtcgcttggtccttttgaaagcagttctgacttctt 11233775  T
Q  224 tgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    ||||||| ||||| ||||| ||||| | ||| |||||||    
T  11233776 tgcctgtttatgctctttccttctttaaagctccatcag 11233814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 265
Target Start/End: Original strand, 9668093 - 9668334
Alignment:
Q  24 tgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggac 123  Q
    |||||| ||||||||||| || || |||||||| |||  ||||||| ||||  | || |||||||| ||||||||||| ||||| |||   |||||||||    
T  9668093 tgaggcggcttcggtgttaagatgtaaagtgggcaagattcctttcatgtatcttggtttacctatagggggtaatccgcgtcgtctttcgttttgggac 9668192  T
Q  124 cctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctc 223  Q
    ||| ||||| || |||| ||||||||| |  | |||||||||| ||||||||| || || ||||| || ||||| ||||| ||| | ||  |||||||      
T  9668193 cctgttgtgaatagaattaaatctagattgtcaggttggaataaccggtttctctcgttcggtggtcgcttggtccttttgaaagcagttctgacttcgt 9668292  T
Q  224 tgcctgtctatgccctttctttcttcagagccccatcagata 265  Q
    || |||||||||| || || ||||| | ||| ||||||||||    
T  9668293 tgtctgtctatgctctgtccttctttaaagctccatcagata 9668334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 28399637 - 28399863
Alignment:
Q  24 tgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggac 123  Q
    ||||||||| ||| ||||||| || ||||||||||| | |||||| |||||| | ||| | ||||| || |||||||| ||  | |||   ||||||||     
T  28399637 tgaggcagcgtcgatgttgagttgtaaagtgggtaaagttccttttttgtacctaggcctgcctataggtggtaatccgcggagacttcagttttgggaa 28399736  T
Q  124 cctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctc 223  Q
    || || ||  |||| || |||||||||||  |||||||| ||||  ||||||| || ||||||||||| ||| | ||  ||||||| ||  |||| ||||    
T  28399737 ccgatcgtaaatcgcattaaatctagactgtcgggttggcatagtaggtttctctcttttggtggacgtttgattctcctaaaatcagttctgacatctc 28399836  T
Q  224 tgcctgtctatgccctttctttcttca 250  Q
    ||||||||||||| |||||||||||||    
T  28399837 tgcctgtctatgctctttctttcttca 28399863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 113 - 262
Target Start/End: Original strand, 25380569 - 25380719
Alignment:
Q  113 gtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttccttt-ggtggacggttggtacttttaaaatctg 211  Q
    |||||||||| ||||||||| |||| || |||||||||||  |  |||||| ||| || ||||| || ||| || || || ||||| ||| | |||||||    
T  25380569 gtttttgggaacctattgtgaatcgtattaaatctagactgtcaagttggattagtcgttttctctctttttggcggccgcttggttcttctcaaatctg 25380668  T
Q  212 tcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    ||||||||| ||||||| ||||||| ||||||||||||| ||| |||||||    
T  25380669 tcttgacttatctgcctctctatgcactttctttcttcaaagctccatcag 25380719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 15018701 - 15018504
Alignment:
Q  53 tgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagact 152  Q
    |||||||||  |||||||| |||||||| ||  | |||||||||||||| |||||  |  |||  ||||| || |||||| ||||  | ||| || || |    
T  15018701 tgggtaaggtgcctttcttatacttgggtttgtcgattgggggtaatcctcgtcgtttgtgttgctgggatccaattgtgaatcgtgttaaagctcgatt 15018602  T
Q  153 tacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
      ||||||||||||| || || || || ||||||||  | |||||  || | ||| ||||||||||||||| |||||||||||| ||||| |||||||    
T  15018601 gtcgggttggaatagtcgtttcctctcttttggtggctgcttggttgttctcaaagctgtcttgacttctcggcctgtctatgcactttccttcttca 15018504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 26147129 - 26147042
Alignment:
Q  163 aatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    ||||| |||||| | || ||||||||  |||| || ||| |||| ||||||||||| ||||| ||||||||||| ||||| |||||||    
T  26147129 aatagtcggtttttatcgtttggtggcaggttagttcttctaaagtctgtcttgacctctctacctgtctatgctctttccttcttca 26147042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 71 - 265
Target Start/End: Complemental strand, 46626828 - 46626634
Alignment:
Q  71 tgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccg 170  Q
    |||||||||| ||  |||||||||||||||| | ||| | |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  46626828 tgtacttgggtttgtctattgggggtaatccgcatcgtcatagtttttgggatcctattgtgcatcgaattaaagctagacttacgggttggaatagccg 46626729  T
Q  171 gtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcagata 265  Q
    ||||||||||||||| ||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||    
T  46626728 gtttctttcctttggaggacgtttggttctgttaaaatctgtcttgacttctctacctgtctatgccctttctttcttcaaagctccatcagata 46626634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 12378041 - 12378281
Alignment:
Q  10 gattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggc 109  Q
    ||||||||||||||||| || ||||||||||| || |||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||  | ||| |    
T  12378041 gattcttggctttgtgaagctgcttcggtgttaagttgcaaagtgggtaaggttccttttttgtacttaggcttccctattgggggtaatctgcatcgtc 12378140  T
Q  110 ttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatc 209  Q
    ||||||||||||||||||||||| |||||||  || |||||  |||| ||| |||||| |||||| | |||||||| ||||  ||||||||| |||||||    
T  12378141 ttagtttttgggaccctattgtgaatcgaattgaagctagaagtacgagtttgaatagtcggtttatctcctttggcggacacttggtacttctaaaatc 12378240  T
Q  210 tgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    ||||||||||||| ||||| || |||| |||||||||||||    
T  12378241 tgtcttgacttctttgcctatcaatgctctttctttcttca 12378281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 250
Target Start/End: Complemental strand, 45993604 - 45993403
Alignment:
Q  49 aaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatcta 148  Q
    |||||||| ||||  |||||||| ||||||||  | || ||||| |||||||| |||||  |  |||| ||||||||| ||||| |||| || || ||||    
T  45993604 aaagtgggaaaggtgcctttcttatacttgggtatgccgattggtggtaatcctcgtcgtttgtgtttctgggaccctgttgtgaatcgtataaagtcta 45993505  T
Q  149 gacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttctt 248  Q
    ||||  | ||||||||||| || || || || |||||||| || ||||| ||| | |||||||| ||||| ||||||||||||||||| |||||||||||    
T  45993504 gactgtcaggttggaatagtcgtttcctctcttttggtggtcgtttggttcttctcaaatctgtgttgacctctctgcctgtctatgctctttctttctt 45993405  T
Q  249 ca 250  Q
    ||    
T  45993404 ca 45993403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 36227329 - 36227476
Alignment:
Q  115 ttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtct 214  Q
    |||||||||||||||||| |||| || || ||||||||  ||||||||||||||  |||||| || || ||||| || ||| | ||| | ||| | || |    
T  36227329 ttttgggaccctattgtgaatcgcattaagtctagactgtcgggttggaatagcaagtttctctcgttcggtggccgcttgatccttcttaaagcagttt 36227428  T
Q  215 tgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  36227429 tgacttctctacctgtctatgccctttctttcttcaaagctccatcag 36227476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 13441022 - 13440885
Alignment:
Q  113 gtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgt 212  Q
    |||| ||||| ||||||||| |||| || |||||||||||  ||||||||||||| |||||||| || | |||||| || ||||| ||  | |||| |||    
T  13441022 gtttctgggaacctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctctcttgtggtggtcgcttggttctactcaaatatgt 13440923  T
Q  213 cttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||| ||||||||||||||||| ||||| |||||||    
T  13440922 cttgacctctctgcctgtctatgcgctttccttcttca 13440885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 262
Target Start/End: Complemental strand, 34232729 - 34232516
Alignment:
Q  49 aaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatcta 148  Q
    |||||||||||||  || || |||||||||||||| ||||||||||| ||||| || ||  | ||||||||||| ||| ||||| |||| || ||| |||    
T  34232729 aaagtgggtaaggtgccgtttttgtacttgggcttgcctattgggggaaatcctcggcgtttgagtttttgggaaccttttgtgaatcgtataaaagcta 34232630  T
Q  149 gacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttctt 248  Q
    |  |  | ||||||||||| || ||| | || |||||||| ||  |||| || ||||| |||||  |||| ||||||| ||||||||| ||||| |||||    
T  34232629 ggttgtctggttggaatagtcgttttttatcttttggtggccgtctggttctgttaaagtctgttctgacctctctgcttgtctatgcgctttccttctt 34232530  T
Q  249 cagagccccatcag 262  Q
    || ||| |||||||    
T  34232529 caaagctccatcag 34232516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 43572617 - 43572335
Alignment:
Q  1 aatatctcggattcttggctttgtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatc 100  Q
    |||||||| ||||||||| |  ||||||| || || |||||||| || ||||| ||||||  |||||| |||||  | ||  | ||||||||||||||||    
T  43572617 aatatctctgattcttggttgagtgaggctgcctcagtgttgagttgtaaagtaggtaagattccttttttgtatctaggtatgcctattgggggtaatc 43572518  T
Q  101 cacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtact 200  Q
    | ||  | |||   |||||||| | | | ||| |||| || ||||||||| |  |||| ||||||||||||||||| || |||||||| || ||| | ||    
T  43572517 cgcggagactttcgttttgggatcatgtcgtgaatcgtattaaatctagattgtcggggtggaatagccggtttctctcgtttggtggtcgcttgatcct 43572418  T
Q  201 tttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcagatagatgggtttggcttcctg 283  Q
      | ||| | || ||||||||||||||||| ||||| ||||| ||||| | ||| ||| ||||||||||| | ||||| ||||    
T  43572417 cctgaaagccgttttgacttctctgcctgtttatgctctttccttctttaaagctccaacagatagatggttgtggctacctg 43572335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 46623911 - 46623855
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    ||||||| ||||||||||||||||||||| | ||| ||||||||||| |||||||||    
T  46623911 tcagatacatgggtttggcttcctgctcctttagatggatacactgtttgtggtgct 46623855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 45164779 - 45164860
Alignment:
Q  169 cggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    ||||||||||||||||| || || ||| | |||||||| |||||||||||  | || ||||||||||| ||||| |||||||    
T  45164779 cggtttctttcctttggaggtcgcttgattcttttaaagtctgtcttgaccgcgctacctgtctatgctctttccttcttca 45164860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 41340484 - 41340376
Alignment:
Q  142 aaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgcccttt 241  Q
    ||||||||| |  ||||||| |||||||| ||||| ||||||||||| || ||| | ||  | ||||| ||  |||||||||||  ||||||||||||||    
T  41340484 aaatctagattgtcgggttgaaatagccgatttctctcctttggtggtcgcttgatcctccttaaatcggttctgacttctctgtatgtctatgcccttt 41340385  T
Q  242 ctttcttca 250  Q
    | |||||||    
T  41340384 ccttcttca 41340376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 15653639 - 15653694
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgc 314  Q
    |||||||||||||||||||||||||||||   ||| |||||||||||  |||||||    
T  15653639 tcagatagatgggtttggcttcctgctcctctagatggatacactgttcgtggtgc 15653694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 41804985 - 41805072
Alignment:
Q  163 aatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    ||||| |||||| | || |||||||| ||||| || ||| |||| ||||||||||| ||||| ||||||||||| || || |||||||    
T  41804985 aatagtcggtttttatcgtttggtggccggttagttcttctaaagtctgtcttgacctctctacctgtctatgctctctccttcttca 41805072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 4078134 - 4078092
Alignment:
Q  220 tctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||    
T  4078134 tctctgcctgtctatgcgctttccttcttcagagctccatcag 4078092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 85 - 262
Target Start/End: Complemental strand, 8596 - 8419
Alignment:
Q  85 cctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttg 184  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  8596 cctattgggggtaatccgcgtcgtcttagtttttgggatcctattgtgaatcgaattaaagctagacttatgggttggaatagccggtttctttcctttg 8497  T
Q  185 gtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    | ||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  8496 gaggacgtttggttctgttaaaatctgtcttgacttctctacctgtctatgccctttctttcttcaaagctccatcag 8419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 7881 - 7825
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    ||||||| ||||||||||||||||||||| | ||| |||||||||||  ||||||||    
T  7881 tcagatacatgggtttggcttcctgctcctttagatggatacactgttcgtggtgct 7825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 109 - 262
Target Start/End: Complemental strand, 7453320 - 7453167
Alignment:
Q  109 cttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaat 208  Q
    |||||||||||||| ||||||||| ||||| | ||| |||||||||||||||||||||||||||||||||||||||| |||||  |||| ||||||||||    
T  7453320 cttagtttttgggatcctattgtgaatcgagttaaagctagacttacgggttggaatagccggtttctttcctttggaggacgtctggttcttttaaaat 7453221  T
Q  209 ctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    |||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||    
T  7453220 ctgtcttgacttctctacctgtctatgcactttctttcttcaaagctccatcag 7453167  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 250
Target Start/End: Original strand, 4987177 - 4987378
Alignment:
Q  49 aaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatcta 148  Q
    |||||||| ||||  |||||||| ||||||||  | || ||||| |||||||| |||||  |  |||| ||||||||| ||||| ||||  | |||||||    
T  4987177 aaagtgggaaaggtgcctttcttctacttgggtatgccgattggtggtaatcctcgtcgtttgtgtttctgggaccctgttgtgaatcgtgtaaaatcta 4987276  T
Q  149 gacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttctt 248  Q
    ||||  | ||||||||||| || || ||||| |||||||| || ||||| ||| | |||||||| ||||| ||||| ||||||||||| |||||||||||    
T  4987277 gactgtcaggttggaatagtcgtttcctttcttttggtggccgtttggttcttctcaaatctgtgttgacctctctacctgtctatgctctttctttctt 4987376  T
Q  249 ca 250  Q
    ||    
T  4987377 ca 4987378  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 16375279 - 16375416
Alignment:
Q  113 gtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgt 212  Q
    |||| ||||| ||||||||| | || || |||||||||||    ||||||||||| |||||||| || |||||||| || ||||| ||  | ||||||||    
T  16375279 gtttctgggaacctattgtgaaccgtattaaatctagactgttaggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgt 16375378  T
Q  213 cttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||| ||||||||||||||| | ||||| |||||||    
T  16375379 cttgacctctctgcctgtctatacactttccttcttca 16375416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 19384644 - 19384700
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||    
T  19384644 tcagatagatgggtttggcttcctgctccgtcagatggatacactgttagtggtgct 19384700  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 7452558 - 7452502
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||  ||||||||    
T  7452558 tcagatagatgggtttggcttcctgctccttcagatggatacactgttcgtggtgct 7452502  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 36158037 - 36157969
Alignment:
Q  194 tggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    |||| |||||||||| ||||||||| ||||||||||||||||| ||||| ||||||| ||| |||||||    
T  36158037 tggttcttttaaaatatgtcttgacctctctgcctgtctatgcgctttccttcttcaaagctccatcag 36157969  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 250
Target Start/End: Original strand, 43611369 - 43611504
Alignment:
Q  115 ttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtct 214  Q
    |||||||||||||||||| |||  || |||||||||||  |||||||||||||| ||||||| || || ||||| || ||| | ||| | ||| | ||      
T  43611369 ttttgggaccctattgtgaatcacattaaatctagactatcgggttggaatagcaggtttctatctttcggtggccgcttgatccttcttaaagcagttc 43611468  T
Q  215 tgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||||||| |||||||||||| |||  |||||||    
T  43611469 tgacttctcttcctgtctatgcctttttattcttca 43611504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 43612363 - 43612510
Alignment:
Q  115 ttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtct 214  Q
    |||||| ||||||||||| |||| || ||||||||| |  |||||||||||||| ||||||| || || ||||| || ||| | ||| | ||| | ||      
T  43612363 ttttggaaccctattgtgaatcgcattaaatctagattgtcgggttggaatagcaggtttctatctttcggtggccgtttgatccttcttaaagcagttc 43612462  T
Q  215 tgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    |||||||||| | ||||||||||||||| ||||| | ||| |||||||    
T  43612463 tgacttctcttcatgtctatgccctttcattcttgaaagctccatcag 43612510  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 261
Target Start/End: Complemental strand, 23943049 - 23942903
Alignment:
Q  115 ttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtct 214  Q
    |||||||| || || ||| ||||||| ||||||||| |  |||||||||||||| | ||||| || || ||||| || ||| | ||| | ||||| ||      
T  23943049 ttttgggaaccaatcgtgaatcgaattaaatctagattgtcgggttggaatagcagatttctctctttcggtggccgcttgatccttctcaaatcagttc 23942950  T
Q  215 tgacttctctgcctgtctatgccctttctttcttcagagccccatca 261  Q
    |||||||| ||||||||||||| ||||| ||||||| ||| ||||||    
T  23942949 tgacttctttgcctgtctatgctctttccttcttcaaagctccatca 23942903  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 7556132 - 7556052
Alignment:
Q  23 gtgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccac 103  Q
    ||||||| |||||||||||||| || |||||||||||| |||||||  ||||  | || ||||||||  ||||||||||||    
T  7556132 gtgaggcggcttcggtgttgagttgtaaagtgggtaagactccttttatgtatctaggtttacctatacggggtaatccac 7556052  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 265
Target Start/End: Complemental strand, 17700380 - 17700292
Alignment:
Q  177 ttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcagata 265  Q
    |||||||||||| || ||| ||||| | ||||||||||||||| | || ||||||||||| ||||| || |||| ||| || |||||||    
T  17700380 ttcctttggtggtcgattgatacttctcaaatctgtcttgactgcgcttcctgtctatgcactttcctttttcaaagctccgtcagata 17700292  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 12332762 - 12332675
Alignment:
Q  163 aatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    ||||| |||||| | || |||||||| || ||||| ||| |||| ||||||||||| ||||| ||||||||||| || || |||||||    
T  12332762 aatagtcggtttttatcgtttggtggccgtttggttcttctaaagtctgtcttgacctctctacctgtctatgctctctccttcttca 12332675  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 36493295 - 36493208
Alignment:
Q  163 aatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    ||||| |||||| | || |||||||| ||||| || ||  |||| ||||||||||| ||||| ||||||||||| ||||| |||||||    
T  36493295 aatagtcggtttttatcgtttggtggccggttagttctcctaaagtctgtcttgacctctctacctgtctatgctctttccttcttca 36493208  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 43247629 - 43247730
Alignment:
Q  31 gcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattg 130  Q
    ||||||||||| || || |||||||| |||  ||||||| ||||| | || |||||||| ||||||||||| ||||| |||   ||| |||||||| |||    
T  43247629 gcttcggtgttaagttgtaaagtgggcaagattcctttcatgtaccttggtttacctatagggggtaatccgcgtcgtctttcgtttagggaccctgttg 43247728  T
Q  131 tg 132  Q
    ||    
T  43247729 tg 43247730  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 6901799 - 6901755
Alignment:
Q  215 tgacttctctgcctgtctatgccctttctttcttcagagccccat 259  Q
    |||||||||||| ||||||||||||||| ||||||| ||| ||||    
T  6901799 tgacttctctgcatgtctatgccctttccttcttcaaagctccat 6901755  T

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Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 26206386 - 26206148
Alignment:
Q  24 tgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggac 123  Q
    |||||| ||||| ||||| || || ||||| ||||| | ||||||||||||  ||||  | |||||||| |||||||| ||  |  |  |||| |||||     
T  26206386 tgaggctgcttccgtgttaagttgtaaagtaggtaacgttcctttcttgtatctgggtatgcctattggtggtaatcctcgaagattgtgtttctgggaa 26206287  T
Q  124 cctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctc 223  Q
    ||||||||| |||| || |||||||||||  ||||||||||||| |||||||| || |||||||| || ||||| ||| | ||||||||| |||| |||     
T  26206286 cctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctatcttttggtggtcgcttggttcttctcaaatctgtcctgacctctt 26206187  T
Q  224 tgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    ||||||||||||| ||||| ||||||| ||| |||||||    
T  26206186 tgcctgtctatgcactttccttcttcaaagctccatcag 26206148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 15674796 - 15674659
Alignment:
Q  113 gtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgt 212  Q
    |||| ||||| ||||||||| |||| || |||||||||||  ||||||||||||| |||||||| || |||||||| || | ||| ||  | ||||||||    
T  15674796 gtttctgggaacctattgtgaatcgtattaaatctagactgtcgggttggaatagacggtttctctcttttggtggtcgctgggttctactcaaatctgt 15674697  T
Q  213 cttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||| ||||||||||||||||| ||||| |||||||    
T  15674696 cttgacctctctgcctgtctatgcactttccttcttca 15674659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 13086596 - 13086358
Alignment:
Q  24 tgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggac 123  Q
    |||||| ||||||||||| || || |||||||| |||  ||||||| ||||| | || |||||||| |||   ||||| ||||| |||   ||||||||     
T  13086596 tgaggcggcttcggtgttaagttgtaaagtgggcaagattcctttcatgtaccttggtttacctatagggtacaatccgcgtcgtctttcgttttgggaa 13086497  T
Q  124 cctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctc 223  Q
    ||| ||||| || |||| |||||||||||  |  |||||||||||||||||||||| || ||||| || ||||| ||||| ||| | ||  ||||||||     
T  13086496 cctgttgtgaatagaattaaatctagactgtcaagttggaatagccggtttctttcgttcggtggtcgcttggtccttttgaaagcagttctgacttctt 13086397  T
Q  224 tgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    ||||||| ||||| ||||| ||||| | ||| |||||||    
T  13086396 tgcctgtttatgctctttccttctttaaagctccatcag 13086358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 33640881 - 33640744
Alignment:
Q  113 gtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgt 212  Q
    |||| ||||||||| ||||| |||| || || ||||||||  | ||||||||||| || || || || |||||||| || ||||| ||| | ||||||||    
T  33640881 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 33640782  T
Q  213 cttgacttctctgcctgtctatgccctttctttcttca 250  Q
     ||||| ||||||||||||||||| |||||||||||||    
T  33640781 gttgacctctctgcctgtctatgctctttctttcttca 33640744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 11469529 - 11469415
Alignment:
Q  115 ttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtct 214  Q
    ||||||||||| |||||| ||||||| |||||||||||  |||| |||||||||| |||||| || ||||||||  | ||| | ||| ||||||| |||     
T  11469529 ttttgggacccgattgtgaatcgaattaaatctagactgtcggggtggaatagcctgtttctctcatttggtggctgcttgattcttctaaaatcagtcc 11469430  T
Q  215 tgacttctctgcctg 229  Q
    |||||||||| ||||    
T  11469429 tgacttctcttcctg 11469415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 33630303 - 33630247
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||  ||||||||    
T  33630303 tcagatagatgggtttgacttcctgctccgtcagatggatacactgttagtggtgct 33630247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 17605572 - 17605659
Alignment:
Q  175 ctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    |||||||||||||| || ||| ||||| | ||||||||||||||| | || ||||||||||| ||||| || |||| ||| |||||||    
T  17605572 ctttcctttggtggtcgtttgatacttctcaaatctgtcttgactgcgcttcctgtctatgcgctttcctttttcaaagctccatcag 17605659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 25351128 - 25351050
Alignment:
Q  172 tttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    ||||| |||| |||||| |||||||| |||||||| | ||||||||| || || ||||||||||| ||||| |||||||    
T  25351128 tttctatcctatggtggtcggttggtccttttaaagtttgtcttgacctcgcttcctgtctatgctctttccttcttca 25351050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 262
Target Start/End: Original strand, 649182 - 649398
Alignment:
Q  46 tgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaat 145  Q
    ||||||||||||||||  || || |||||||||| | | ||||| ||||| ||| | || ||  | ||||||||||| || |||||| |||| || |||     
T  649182 tgcaaagtgggtaaggtgccgtttttgtacttggacatgcctatcgggggaaattctcggcgtttaagtttttgggaaccaattgtgaatcgcataaaag 649281  T
Q  146 ctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttcttt 245  Q
    ||||  |  |  |||||||||| || ||||| || ||||| || ||  ||||  | ||||| |||||  |||| ||||||||||||||||| ||||| ||    
T  649282 ctaggttgtctagttggaatagtcgttttctatcttttggcggccgtctggttttgttaaagtctgttctgacctctctgcctgtctatgcgctttcctt 649381  T
Q  246 cttcagagccccatcag 262  Q
    ||||| ||| |||||||    
T  649382 cttcaaagctccatcag 649398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 21629360 - 21629427
Alignment:
Q  175 ctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttc 242  Q
    |||||||||||||| || ||| ||||| | ||||||||||||||| | || ||||||||||| |||||    
T  21629360 ctttcctttggtggtcgcttgatacttctcaaatctgtcttgactgcgcttcctgtctatgcactttc 21629427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 26514647 - 26514552
Alignment:
Q  155 cgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||| ||| |||| || ||||| || |||||||| || ||||| ||||| || || |||||||| || || ||||||||||| |||||||||||||    
T  26514647 cggggtggcatagtcgctttctatcttttggtggtcgtttggtccttttgaagtcggtcttgacctcgcttcctgtctatgctctttctttcttca 26514552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 10363054 - 10362973
Alignment:
Q  169 cggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||||| || |||||||| || || || ||| | || ||||||||||| ||||| ||||||||||| ||||| |||||||    
T  10363054 cggtttctgtcgtttggtggtcgtttagttcttctcaagtctgtcttgacctctctacctgtctatgctctttccttcttca 10362973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 19616147 - 19616196
Alignment:
Q  205 aaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagc 254  Q
    ||||||||| || | |||||||||||||||||||||||||| || |||||    
T  19616147 aaatctgtcatgtcctctctgcctgtctatgccctttctttttttagagc 19616196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 1683246 - 1683202
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacact 303  Q
    |||||||||| ||||||||||||| |||||||| | |||||||||    
T  1683246 tcagatagattggtttggcttcctactccgtcaaatggatacact 1683202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 5498139 - 5497901
Alignment:
Q  24 tgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggac 123  Q
    |||||| ||||| ||||| || || ||||| ||||| | ||||||||||||  ||||  | |||||||| |||||||| ||  |  |  |||| |||||     
T  5498139 tgaggctgcttccgtgttaagttgtaaagtaggtaacgttcctttcttgtatctgggtatgcctattggtggtaatcctcgaagattgcgtttctgggaa 5498040  T
Q  124 cctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctc 223  Q
    ||||||||| |||| || |||||||||||  ||||||||||||| |||||||| || |||||||| || ||||| ||| | ||||||||| |||| |||     
T  5498039 cctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctatcttttggtggtcgcttggttcttctcaaatctgtcctgacctctt 5497940  T
Q  224 tgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    |||||||||||||  |||| ||||||| ||| |||||||    
T  5497939 tgcctgtctatgcaatttccttcttcaaagctccatcag 5497901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 48072602 - 48072739
Alignment:
Q  113 gtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgt 212  Q
    |||| ||||| ||||||||| |||| || |||||||||||  ||||||||||||| |||||||| || |||||||| || ||||| ||  | ||||||||    
T  48072602 gtttctgggaacctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgt 48072701  T
Q  213 cttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||| ||||||||||||||||| ||||| |||||||    
T  48072702 cttgacctctctgcctgtctatgcgctttccttcttca 48072739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 32352488 - 32352625
Alignment:
Q  113 gtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgt 212  Q
    |||| ||||| ||||||||| || | || |||||||||||  ||||||||||||| |||||||| || |||||||| || ||||| ||  | ||||||||    
T  32352488 gtttctgggaacctattgtgaattgtattaaatctagactgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgt 32352587  T
Q  213 cttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||| ||||||||||||||||| ||||| |||||||    
T  32352588 cttgacctctctgcctgtctatgcactttccttcttca 32352625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 20796713 - 20796475
Alignment:
Q  24 tgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggac 123  Q
    |||||| ||||||||||| || || |||||||| |||  ||||||| ||||| | || |||||||| |||||||||||  |||| |||   |||||||||    
T  20796713 tgaggcggcttcggtgttaagttgtaaagtgggcaagattcctttcatgtaccttggtttacctatagggggtaatccgtgtcgtctttcattttgggac 20796614  T
Q  124 cctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctc 223  Q
    ||| ||||| || |||| ||||||||| |  | ||||||||||| || ||||| || || ||||| || ||||| ||||| ||| | ||  ||||||||     
T  20796613 cctgttgtgaatagaattaaatctagattgtcaggttggaatagtcgatttctctcgttcggtggtcgcttggtccttttgaaagcagttctgacttctt 20796514  T
Q  224 tgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    | ||||||||||| ||||| ||||| | ||| |||||||    
T  20796513 ttcctgtctatgctctttccttctttaaagctccatcag 20796475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 39431339 - 39431121
Alignment:
Q  24 tgaggcagcttcggtgttgagctgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggac 123  Q
    |||||| ||||||||||| || || |||||||| |||  ||||||| ||||  | || |||||||| |||||||||||  |||| |||   |||||||||    
T  39431339 tgaggcggcttcggtgttaagttgtaaagtgggcaagattcctttcatgtatcttggtttacctatagggggtaatccgagtcgtctttcattttgggac 39431240  T
Q  124 cctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctc 223  Q
    ||| ||||| || |||| ||||||||| |  | ||||||||||| |||||||| || || ||||| || ||||| ||||| ||| | ||| ||| |||      
T  39431239 cctgttgtgaatagaattaaatctagattgtcaggttggaatagtcggtttctctcgttcggtggtcgcttggtccttttgaaagcagtcctgaattcgt 39431140  T
Q  224 tgcctgtctatgccctttc 242  Q
    ||||||||||||| |||||    
T  39431139 tgcctgtctatgctctttc 39431121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 64 - 250
Target Start/End: Original strand, 25504119 - 25504305
Alignment:
Q  64 cctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttgga 163  Q
    |||||||| ||||||||  | || ||||| |||||||| |||||  |  |||  |||| |||| ||||| |||| || |||||||||||  | |||||||    
T  25504119 cctttcttatacttgggtatgccgattggtggtaatcctcgtcgtttgtgttcctgggtccctgttgtgaatcgtataaaatctagactgtcaggttgga 25504218  T
Q  164 atagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||| || || || || |||||||| || ||||| ||| | |||||||| ||||| ||||| ||||||||||| |||||||||||||    
T  25504219 atagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgtgttgacctctcttcctgtctatgctctttctttcttca 25504305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 262
Target Start/End: Complemental strand, 17709089 - 17708873
Alignment:
Q  46 tgcaaagtgggtaaggctcctttcttgtacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaatcaaat 145  Q
    ||||||||||||||||  || || |||||||||||||| ||||| ||||| ||| | || ||  | ||||||||||| ||  ||||| |||| || |||     
T  17709089 tgcaaagtgggtaaggtgccgtttttgtacttgggctttcctatcgggggaaattctcggcgtttgagtttttgggaaccatttgtgaatcgtataaaag 17708990  T
Q  146 ctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttcttt 245  Q
    ||||  |  | ||||||||||| || ||||| || ||||| || ||  ||||    ||||| |||||  |||| ||||||||||||||||| ||||| ||    
T  17708989 ctaggttgtctggttggaatagtcgttttctatcttttggcggccgtctggtttagttaaagtctgttctgacctctctgcctgtctatgcactttcctt 17708890  T
Q  246 cttcagagccccatcag 262  Q
    ||||| ||| |||||||    
T  17708889 cttcaaagctccatcag 17708873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 21528367 - 21528311
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| ||  ||||||||    
T  21528367 tcagatagacgggtttggcttcctgctccgtcagatggatacaccgttagtggtgct 21528311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 48265652 - 48265708
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||||  ||||||||    
T  48265652 tcagatatatgagtttggcttcctgctccgtcagatggatacactgttagtggtgct 48265708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 262
Target Start/End: Complemental strand, 26721598 - 26721448
Alignment:
Q  112 agtttttgggaccctattgtgcatcgaatcaaatctagacttacgggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctg 211  Q
    ||||||||||| ||||||||| |||| || ||| ||||  |  | ||||||||||| || ||| | || | ||| || ||  |||| |||||||| | ||    
T  26721598 agtttttgggaacctattgtgaatcgcattaaaactaggttgtctggttggaatagtcgttttttatcttatggcggccgtctggttcttttaaagtttg 26721499  T
Q  212 tcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    || |||| ||||||||||||||||| ||||| ||||||| ||| |||||||    
T  26721498 tcctgacctctctgcctgtctatgcgctttccttcttcaaagctccatcag 26721448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 49264185 - 49264290
Alignment:
Q  157 ggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccc 256  Q
    ||||||||||| |||||||| || || ||||| || ||||| ||||| ||| | ||  |||||||  ||||||||||||| ||||||||||| | ||| |    
T  49264185 ggttggaatagtcggtttctctcgttcggtggtcgcttggtccttttgaaagcagttctgacttcgttgcctgtctatgctctttctttctttaaagctc 49264284  T
Q  257 catcag 262  Q
    ||||||    
T  49264285 catcag 49264290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 36929373 - 36929317
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacactgtctgtggtgct 315  Q
    ||||||| ||||||||| ||||||||||| ||||| |||||||||||  ||||||||    
T  36929373 tcagatatatgggtttgacttcctgctccttcagatggatacactgttcgtggtgct 36929317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 22191053 - 22191107
Alignment:
Q  208 tctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    ||||||||| ||||||| |||||||||||  |||| ||||||||||| |||||||    
T  22191053 tctgtcttgtcttctcttcctgtctatgctttttccttcttcagagcaccatcag 22191107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 7395940 - 7396045
Alignment:
Q  157 ggttggaatagccggtttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccc 256  Q
    |||||||| || || ||||| |||||||| || || |||||  | ||||| ||||||||||| ||| || |||||||||  ||||| ||||||| ||| |    
T  7395940 ggttggaagagtcgttttctctcctttggcggccgtttggttttgttaaagtctgtcttgacctctttgtctgtctatgatctttccttcttcaaagctc 7396039  T
Q  257 catcag 262  Q
    ||||||    
T  7396040 catcag 7396045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 44890324 - 44890255
Alignment:
Q  181 tttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||||| || ||||| || || |||||||||||| | ||| ||||||| ||||| |||||||||||||    
T  44890324 tttggtggtcgtttggttctgttgaaatctgtcttgtcatctatgcctgtttatgctctttctttcttca 44890255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 45271137 - 45271068
Alignment:
Q  181 tttggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    |||||||| |||||||| ||  | || ||||||||||| ||||| ||||||||||| ||||| |||||||    
T  45271137 tttggtggccggttggttctccttaagtctgtcttgacctctcttcctgtctatgctctttccttcttca 45271068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 36305990 - 36305946
Alignment:
Q  259 tcagatagatgggtttggcttcctgctccgtcagagggatacact 303  Q
    ||||||| ||||||||| ||||||||||| ||||| |||||||||    
T  36305990 tcagatatatgggtttgtcttcctgctccttcagatggatacact 36305946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 43943750 - 43943794
Alignment:
Q  210 tgtcttgacttctctgcctgtctatgccctttctttcttcagagc 254  Q
    ||||||| |||| |||||||| ||||||||||| |||||||||||    
T  43943750 tgtcttgtcttcactgcctgtatatgccctttccttcttcagagc 43943794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 8415 - 8347
Alignment:
Q  194 tggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    |||| |||||||| |||||| |||| ||||||||||||||||| ||||| ||||||| ||| |||||||    
T  8415 tggttcttttaaagtctgtcctgacctctctgcctgtctatgcgctttccttcttcaaagctccatcag 8347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 13349 - 13281
Alignment:
Q  194 tggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttcagagccccatcag 262  Q
    |||| |||||||| | |||| | || ||||||||||||||||| ||||| ||||||| ||| |||||||    
T  13349 tggttcttttaaagtttgtccttacctctctgcctgtctatgcgctttccttcttcaaagctccatcag 13281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 26193 - 26127
Alignment:
Q  184 ggtggacggttggtacttttaaaatctgtcttgacttctctgcctgtctatgccctttctttcttca 250  Q
    ||||| || ||||| || |||||||||||| || | || |||||||| |||||||||||||||||||    
T  26193 ggtggccgcttggttctattaaaatctgtcctgtcatcgctgcctgtttatgccctttctttcttca 26127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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