View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21668_high_21 (Length: 308)
Name: NF21668_high_21
Description: NF21668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21668_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 6855242 - 6855092
Alignment:
| Q |
10 |
ccacagagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcat |
109 |
Q |
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| T |
6855242 |
ccacagagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcat |
6855143 |
T |
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| Q |
110 |
tcgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagat |
160 |
Q |
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| T |
6855142 |
tcgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagat |
6855092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 6823024 - 6823122
Alignment:
| Q |
62 |
tgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagat |
160 |
Q |
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| T |
6823024 |
tgcatattgtagtattttatgtggaggcgctgttagagaaagaatcattcgagctttcttggttgaagagaaaaagatagtcaagaatgttctgaagat |
6823122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 24244974 - 24245067
Alignment:
| Q |
10 |
ccacagagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaag |
103 |
Q |
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| T |
24244974 |
ccactgagtacaagagatctaggttacctagaaacaggaggactgtgaatcgtgcctatggtggagttttatctggaggtgctgttagagaaag |
24245067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 24245690 - 24245736
Alignment:
| Q |
114 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagat |
160 |
Q |
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| T |
24245690 |
gctttcttggttgaagagcaaaagatcgtcaagaaagtcttgaagat |
24245736 |
T |
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