View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21668_high_23 (Length: 304)

Name: NF21668_high_23
Description: NF21668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21668_high_23
NF21668_high_23
[»] chr7 (6 HSPs)
chr7 (8-304)||(18395925-18396230)
chr7 (59-118)||(27073633-27073692)
chr7 (59-118)||(27204621-27204680)
chr7 (22-71)||(23565313-23565363)
chr7 (8-112)||(40808414-40808520)
chr7 (25-105)||(36146678-36146759)
[»] chr8 (8 HSPs)
chr8 (8-126)||(11712241-11712361)
chr8 (24-105)||(32902442-32902524)
chr8 (24-102)||(29796578-29796656)
chr8 (76-157)||(7597380-7597462)
chr8 (76-126)||(8153572-8153622)
chr8 (49-102)||(3232092-3232145)
chr8 (49-126)||(8863333-8863409)
chr8 (50-98)||(18141659-18141706)
[»] chr2 (3 HSPs)
chr2 (8-126)||(4560904-4561024)
chr2 (49-93)||(28671797-28671841)
chr2 (24-98)||(36773387-36773462)
[»] scaffold0129 (1 HSPs)
scaffold0129 (25-105)||(19854-19933)
[»] chr4 (6 HSPs)
chr4 (49-164)||(21704109-21704225)
chr4 (49-164)||(3739397-3739511)
chr4 (24-98)||(6677306-6677380)
chr4 (24-105)||(36463657-36463738)
chr4 (59-102)||(4587792-4587835)
chr4 (71-104)||(43208174-43208207)
[»] chr1 (4 HSPs)
chr1 (24-98)||(8871315-8871390)
chr1 (54-110)||(2263271-2263327)
chr1 (24-100)||(28265821-28265898)
chr1 (76-124)||(25116407-25116455)
[»] chr5 (1 HSPs)
chr5 (49-123)||(5611451-5611524)
[»] chr3 (5 HSPs)
chr3 (49-123)||(21156738-21156811)
chr3 (49-102)||(40519479-40519532)
chr3 (49-102)||(2075350-2075403)
chr3 (54-98)||(9666754-9666797)
chr3 (49-105)||(37761765-37761820)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 18396230 - 18395925
Alignment:
Q  8 caccacagacattcaacctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgca 107  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396230 caccaaagacattcaacctaaagttacctccttgatatccaaagtttctctctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgca 18396131  T
Q  108 caagtcccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaatttt 207  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396130 caagttccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaatttt 18396031  T
Q  208 tcgaatcaaa---------accttaaccaaaatcgcgtcacgatttttgcaaatcacggcccaatttttgtcgatattttagacaaatttcaacatttgt 298  Q
    ||||||||||         ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  18396030 tcgaatcaaaacctccaaaaccttaaccaaaatctcgtcacgatttttgcaaatcgcggcccaatttttgtcgattttttagacaaatttcaacatttgt 18395931  T
Q  299 tttcct 304  Q
    ||||||    
T  18395930 tttcct 18395925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 27073692 - 27073633
Alignment:
Q  59 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgag 118  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||| ||||||    
T  27073692 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27073633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 27204621 - 27204680
Alignment:
Q  59 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgag 118  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||| ||||||    
T  27204621 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27204680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 23565313 - 23565363
Alignment:
Q  22 aacctaaagttacctcctt-gatacccaaagtttctcactcttgaagctct 71  Q
    ||||||||||||||||||| |||| || ||||||||| |||||||||||||    
T  23565313 aacctaaagttacctcctttgatatcccaagtttctctctcttgaagctct 23565363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 40808520 - 40808414
Alignment:
Q  8 caccacagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 105  Q
    ||||| ||||| |||||| ||||||||||||||| ||| | | |||||| || ||||| |||  ||||||| |||||||||||||||||  ||||||  |    
T  40808520 caccaaagacactcaaccctaaagttacctcctttgattctctaagtttatctctctttaagtcctacttataacatgaagaatgaagttctatatagag 40808421  T
Q  106 cacaagt 112  Q
    |||||||    
T  40808420 cacaagt 40808414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 36146678 - 36146759
Alignment:
Q  25 ctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 105  Q
    |||||||||||||||| |||  || |||||| || ||||||||||||| |  |||| ||||||||||||| |||| ||||||    
T  36146678 ctaaagttacctcctttgatttcccaagtttttctctcttgaagctcttcccaaaaaatgaagaatgaagccttaaataatg 36146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 11712241 - 11712361
Alignment:
Q  8 caccacagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 105  Q
    ||||| ||||| |||||| |||||||||||| || ||||||| ||||||||| ||||||||||||||| |||||||| |||||||||  |||||||| ||    
T  11712241 caccaaagacactcaaccctaaagttacctcatttgataccctaagtttctctctcttgaagctctacctaaaacataaagaatgaaaccttatatagtg 11712340  T
Q  106 cacaagtcccgagaaaatcgt 126  Q
    |||| ||||| ||||||||||    
T  11712341 cacatgtcccaagaaaatcgt 11712361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 32902442 - 32902524
Alignment:
Q  24 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 105  Q
    |||||||||||||| | ||||  || ||||||||| |||||||||| || || ||||||||||||||||||||||||| ||||    
T  32902442 cctaaagttacctcatctgatttcccaagtttctctctcttgaagccctcctcaaaacatgaagaatgaagtcttatacaatg 32902524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 29796578 - 29796656
Alignment:
Q  24 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 102  Q
    ||||||||||||||||| |||  |  ||||||||| ||||||||| ||| || |||||||||||||||||| ||||||||    
T  29796578 cctaaagttacctcctttgatttctcaagtttctctctcttgaag-tctcctcaaaacatgaagaatgaagccttatata 29796656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 7597462 - 7597380
Alignment:
Q  76 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaa-tcgtatcacaattttcactaattgtgccacgattt 157  Q
    |||||||||||||||||| |||||||| ||| ||| || |||||||| | ||  | | |||||||| ||||||||||||||||    
T  7597462 aaaacatgaagaatgaagccttatatagtgctcaaatctcgagaaaaattgtgccccgattttcaccaattgtgccacgattt 7597380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 8153622 - 8153572
Alignment:
Q  76 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 126  Q
    |||||||||||||||||| ||| ||||||| |||||  |||||||||||||    
T  8153622 aaaacatgaagaatgaagccttttataatgtacaagatccgagaaaatcgt 8153572  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 3232092 - 3232145
Alignment:
Q  49 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 102  Q
    ||||||||  ||||| | |||||||| |||||||||||||||||| ||||||||    
T  3232092 aagtttctttctcttaatgctctactcaaaacatgaagaatgaagccttatata 3232145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 8863409 - 8863333
Alignment:
Q  49 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 126  Q
    |||||| || |||||||||||| ||  |||||||||||||||||| |||||||| |||||| |  | |||||||||||    
T  8863409 aagtttttctctcttgaagctc-acccaaaacatgaagaatgaagccttatatagtgcacatgatctgagaaaatcgt 8863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 18141706 - 18141659
Alignment:
Q  50 agtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 98  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| ||||    
T  18141706 agtttctctctcttgaagctctactcaaaa-atgaagaatgaagcctta 18141659  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 4561024 - 4560904
Alignment:
Q  8 caccacagacattcaac-ctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 105  Q
    ||||| ||||| ||||| ||||||||| ||||| ||||  || |||||| || ||||||||| | | || ||||||||||||||||||||||||| ||||    
T  4561024 caccaaagacactcaactctaaagttatctcctctgatttcctaagtttttctctcttgaagttattctaaaaacatgaagaatgaagtcttatacaatg 4560925  T
Q  106 cacaagtcccgagaaaatcgt 126  Q
    |||||||||||||||||||||    
T  4560924 cacaagtcccgagaaaatcgt 4560904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 28671841 - 28671797
Alignment:
Q  49 aagtttctcactcttgaagctctacttaaaacatgaagaatgaag 93  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  28671841 aagtttctctctcttgaagccctactcaaaacatgaagaatgaag 28671797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 36773462 - 36773387
Alignment:
Q  24 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 98  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||||   |||| ||||||||||||||||||    
T  36773462 cctaaagttacctcctttgatttccctagtttctctctcttgaagctctatacaaaaaatgaagaatgaagtctta 36773387  T

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Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 19854 - 19933
Alignment:
Q  25 ctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 105  Q
    |||||||||||||||||||  || ||||||| | |||||||||| ||||| |||||| ||||||||||||| |||||||||    
T  19854 ctaaagttacctccttgatttcccaagtttcactctcttgaagc-ctactcaaaacaagaagaatgaagtcatatataatg 19933  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 21704109 - 21704225
Alignment:
Q  49 aagtttctcactcttgaagc-tctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgtatcacaattttcactaattgt 147  Q
    ||||||||| |||||||||| |||||  |||||||||| |||||||||||| ||| |||||| |||| |  ||||||||  | |||||||  ||||| ||    
T  21704109 aagtttctctctcttgaagcctctacacaaaacatgaaaaatgaagtcttaaatagtgcacatgtcctgtcaaaatcgtgccccaattttacctaatcgt 21704208  T
Q  148 gccacgatttcaagtta 164  Q
    |||||||||||| ||||    
T  21704209 gccacgatttcacgtta 21704225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 3739397 - 3739511
Alignment:
Q  49 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgtatcacaattttcactaattgtg 148  Q
    ||||||||| ||||||||  | |||| ||||||||||||||||||||||| |||||||||| ||||||  ||||||||  | | |||| |||  ||| ||    
T  3739397 aagtttctctctcttgaaa-tgtactcaaaacatgaagaatgaagtcttaaataatgcacatgtcccgtcaaaatcgtgcctcgatttacacacattttg 3739495  T
Q  149 ccacgatttcaagtta 164  Q
    ||||||||||| ||||    
T  3739496 ccacgatttcacgtta 3739511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 6677380 - 6677306
Alignment:
Q  24 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 98  Q
    ||||||||||||||||| ||||||| || ||||||  ||||||||| ||||| |||||||||||||||||| ||||    
T  6677380 cctaaagttacctcctttgataccctaaatttctctttcttgaagc-ctactcaaaacatgaagaatgaagcctta 6677306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 36463657 - 36463738
Alignment:
Q  24 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 105  Q
    |||||||||||||||| ||||  || |||||| || |||||||||||||||| |||| ||||||||||||| |||| ||||||    
T  36463657 cctaaagttacctcctatgatttcccaagtttttctctcttgaagctctactcaaaa-atgaagaatgaagccttaaataatg 36463738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 4587835 - 4587792
Alignment:
Q  59 ctcttgaagctctacttaaaacatgaagaatgaagtcttatata 102  Q
    ||||||||||||| || |||||||||||||||||||||| ||||    
T  4587835 ctcttgaagctctcctcaaaacatgaagaatgaagtcttttata 4587792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 43208174 - 43208207
Alignment:
Q  71 tacttaaaacatgaagaatgaagtcttatataat 104  Q
    |||| |||||||||||||||||||||||||||||    
T  43208174 tactcaaaacatgaagaatgaagtcttatataat 43208207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 8871315 - 8871390
Alignment:
Q  24 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 98  Q
    ||||||||||||| ||| |||| ||  |||||||| |||||||||||||||  |||||||||||||||||| ||||    
T  8871315 cctaaagttacctgctttgatatccctagtttctctctcttgaagctctaccaaaaacatgaagaatgaagcctta 8871390  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 2263271 - 2263327
Alignment:
Q  54 tctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaa 110  Q
    |||| ||||||| |||||||  |||||||||||||||||| |||||||| |||||||    
T  2263271 tctctctcttgacgctctacacaaaacatgaagaatgaagccttatatagtgcacaa 2263327  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 28265821 - 28265898
Alignment:
Q  24 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttata 100  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||| |  |||| ||||||||||||| ||||||    
T  28265821 cctaaagttacctcctttgatttccctagtttctctctcttgaagctcttcccaaaaaatgaagaatgaagccttata 28265898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 25116455 - 25116407
Alignment:
Q  76 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatc 124  Q
    |||||||||||||||||| |||||||| |||||| | || |||||||||    
T  25116455 aaaacatgaagaatgaagacttatatagtgcacatgacctgagaaaatc 25116407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 5611451 - 5611524
Alignment:
Q  49 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaat 123  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  5611451 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 5611524  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 21156738 - 21156811
Alignment:
Q  49 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaat 123  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  21156738 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 21156811  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 40519479 - 40519532
Alignment:
Q  49 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 102  Q
    ||||||||| |||||||||||||||| || |||||| |||||||| ||||||||    
T  40519479 aagtttctctctcttgaagctctactcaatacatgatgaatgaagccttatata 40519532  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 2075350 - 2075403
Alignment:
Q  49 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 102  Q
    ||||||||| ||||||||||   ||| |||||||||||||||||| ||||||||    
T  2075350 aagtttctctctcttgaagcctcactcaaaacatgaagaatgaagccttatata 2075403  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 9666754 - 9666797
Alignment:
Q  54 tctcactcttgaagctctacttaaaacatgaagaatgaagtctta 98  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||    
T  9666754 tctctctcttgaagctctactcaaaa-atgaagaatgaagtctta 9666797  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 37761765 - 37761820
Alignment:
Q  49 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 105  Q
    ||||| ||| |||||||||| | ||| |||||||||||||| |||||||||||||||    
T  37761765 aagttactctctcttgaagc-caactaaaaacatgaagaataaagtcttatataatg 37761820  T

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