View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21668_high_3 (Length: 652)
Name: NF21668_high_3
Description: NF21668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21668_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 27 - 448
Target Start/End: Original strand, 52445028 - 52445451
Alignment:
| Q |
27 |
caaagaggcctctcaccgcatcttcagtgagtgcttgctgctgcagattcaaaacttggttctgcagctccgcaatcttcgcaacatgagcaagaacctt |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
52445028 |
caaagaggcctctcaccgcatcttcagtgagtgcttgctgctgcagattcaaaacttggttctgcagctccgcaatcttcgcaacatgagcacggacctt |
52445127 |
T |
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| Q |
127 |
agcaatcctaacacaaagataaggtgttgcactgccacgcctgtgcatgaccctaatttgcatcatgcactgctccacggacttgtcagccatgtcatgc |
226 |
Q |
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| T |
52445128 |
agcaatcctaacacaaagataaggtgttgcactgccacgcctgtgcatgaccttaatttgcatcatgcactgctccacgtacttgtcagccatgtcatgc |
52445227 |
T |
|
| Q |
227 |
tcgtacacaatgtcattcttgatgacatccatatgatattcatgctcagccactcctttgtaaagtatgacctttctaacatacttaaatttgtccacga |
326 |
Q |
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| T |
52445228 |
tcgtacataatgtcattcttgatgacatccatatgatatccatgctcagccactccttcgtaaagtatgacctttctaacatacttaaatttgtccacga |
52445327 |
T |
|
| Q |
327 |
gaacgatattttcagacacatgataatcaggcaaggcaaaggaaatgcaacaatgtccacgaatccatcaaccacaaac--ttggagcaatccaccagca |
424 |
Q |
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| T |
52445328 |
gaacgagatcttcggacacataataatcaggcaaggcaaaggaaatgcaacaatgtccacgaatccatcaaccacaaactgttggagcaatccaccagca |
52445427 |
T |
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| Q |
425 |
atggtaaggacctccatcggagat |
448 |
Q |
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| T |
52445428 |
atggtaaggacctccgtcggagat |
52445451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 446 - 633
Target Start/End: Original strand, 52445741 - 52445928
Alignment:
| Q |
446 |
gatttaattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttcttacaaactattgagtactaacacatttgtct |
545 |
Q |
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| T |
52445741 |
gatttaattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttcttacaaactattgagtactaacacatttgtct |
52445840 |
T |
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| Q |
546 |
acaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctcatgatatgagtttgaaccgtgacacgtatgatgatgt |
633 |
Q |
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| T |
52445841 |
aaaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctcatgatatgagtttgaaccctgacacgtatgatgatgt |
52445928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 451 - 580
Target Start/End: Original strand, 52447657 - 52447786
Alignment:
| Q |
451 |
aattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttcttacaaactattgagtactaacacatttgtctacaag |
550 |
Q |
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||||||| |||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| |||||||| || || |||| |||||||||||||||| |
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| T |
52447657 |
aattaaattcatattaatacacatcttatcctttaattgaatttcaacatgtttaatttcttcatacaaacttttaagcactagcacatttgtctacaag |
52447756 |
T |
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| Q |
551 |
ttttaactaaacatgtaaaaatatcaaaat |
580 |
Q |
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||| |||||||||||||||||||||||||| |
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| T |
52447757 |
tttgaactaaacatgtaaaaatatcaaaat |
52447786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 497 - 623
Target Start/End: Original strand, 52446722 - 52446848
Alignment:
| Q |
497 |
atatgtttaatttcttcttacaaactattgagtactaacacatttgtctacaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctc |
596 |
Q |
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||||||||||||| ||| |||||| |||| || ||||||| || ||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||| |
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| T |
52446722 |
atatgtttaatttattcatacaaattattaagcactaacatatctgtctacaagttttaggtaaacatgtaaaaatattgaaatctctaggtcggacctc |
52446821 |
T |
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| Q |
597 |
atgatatgagtttgaaccgtgacacgt |
623 |
Q |
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| T |
52446822 |
atgatatgagtttgaaccttgatacgt |
52446848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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