View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21668_high_7 (Length: 353)
Name: NF21668_high_7
Description: NF21668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21668_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 45666243 - 45666577
Alignment:
| Q |
19 |
gtatacacgaataatccgcagcagcaatcaatgttattctcatgtcacttttgtatttgcattacatacatatatgtacagtaatatatattctagctat |
118 |
Q |
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| T |
45666243 |
gtatacacgaataatccgcagcagcaatcaatgttattctcatgtcacttttgtatttgcattacatacatatatgtacagtaatatatattctagctat |
45666342 |
T |
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| Q |
119 |
atggtatagagtagcacatttgtttgtatatattattatgattatgatatatagtgaaaatgaaagaaaacgatctaaaatcttgatttgaggagatgga |
218 |
Q |
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| T |
45666343 |
atggtatagagtagcacatttgtttgtatatattattatgattatgatatatagtgaaaatgaaagaaaacgatctaaaatcttgatttgaggagatgga |
45666442 |
T |
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| Q |
219 |
cgtgtaacgacacgttcgatccttaagcaaaacatgaaagtatacgaatctaccaatggcacgtttgtttgagaaatgaacacgattgcctagctattac |
318 |
Q |
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| T |
45666443 |
cgtgtaacgacacgttcgatccttaagcaaaacatgaaagtatacgaatctaccaatggcacgtttgtttgagaaatgaacacgattgcctagctattac |
45666542 |
T |
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| Q |
319 |
gtaagaaattttgtgttctttcaattggatattga |
353 |
Q |
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| T |
45666543 |
gtaagaaattttgtgttctttcaattggatattga |
45666577 |
T |
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