View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21668_high_9 (Length: 351)
Name: NF21668_high_9
Description: NF21668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21668_high_9 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 58 - 351
Target Start/End: Original strand, 46873096 - 46873389
Alignment:
| Q |
58 |
ctgtgcaagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggggcacttatcggaaga |
157 |
Q |
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| T |
46873096 |
ctgtgcaagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggggcacttatcggaaga |
46873195 |
T |
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| Q |
158 |
ctaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctcgtggtgaagaaggtaacaataactcattttgatt |
257 |
Q |
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| T |
46873196 |
ctaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctcatggtgaagaaggtaacaataactcattttgatt |
46873295 |
T |
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| Q |
258 |
attggttttggttttatcatataattctactgttttatattgttcaatcatataaaatannnnnnnnnnnaattttctagatgctgtgtagaat |
351 |
Q |
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| T |
46873296 |
attggttttggttttatcatataattctactgttttatattgttcaatcatataaaatatgtttttttttaattttctagatgctgtgtagaat |
46873389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 46890593 - 46890766
Alignment:
| Q |
143 |
gcacttatcggaagactaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctcgtggtgaagaaggtaacaa |
242 |
Q |
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| T |
46890593 |
gcacttatcggaagactaagctgtgtcgcaattggaagcatacaggatattgttcctttggaatgaactgtctctttgctcatggtgaagaaggtaacaa |
46890692 |
T |
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| Q |
243 |
taactcattttgattattggttttggttttatcatataattctactgttttatattgttcaatcatataaaata |
316 |
Q |
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| T |
46890693 |
taactcattttgcttattggttttggttttatcatataattctattgctttattttgtttaattatataaaata |
46890766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 46890418 - 46890502
Alignment:
| Q |
58 |
ctgtgcaagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggg |
142 |
Q |
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| T |
46890418 |
ctgtgcaagaattattgcaatggggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttaggg |
46890502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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