View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21669_high_15 (Length: 345)
Name: NF21669_high_15
Description: NF21669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21669_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 13982961 - 13982638
Alignment:
| Q |
1 |
acaacaacatcatcaaaacatgtgctattgttttcactacataaaagattagattcagcactgtcaaagctttcagccattgaaagagaggttgattaaa |
100 |
Q |
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| T |
13982961 |
acaacaacatcatcaaaacatgtgctattgttttcactacataaaagattagattcagcactgtcaaagctttcagccattgaaagagaggttgattaaa |
13982862 |
T |
|
| Q |
101 |
agggtgctaataatgaaacttcatgaaaaggggttattgnnnnnnnnnnnnnnnnnnnnnctttattgatgtggttagatgaaaaaattgaaatggcact |
200 |
Q |
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| T |
13982861 |
agggtgctaataatgaaacttcatgaaaaggggttattgaaaaaagcttaaaaaacaaaactttattgatgtgattagatgaaaaaattgaaatggcact |
13982762 |
T |
|
| Q |
201 |
ggttgaacatggaaagagagtgtgagagtgatgaaagatgaagaggtttatgtaggaaatgggtttgtgtgttttagggtaaaaagaatagagagagatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13982761 |
ggttgaacatggaaagagagtgtgagagtgatgaaagatgaagaggtttatgtaggaaatgggtttgtgtgttttagggtaaaaagaatagagagagatt |
13982662 |
T |
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| Q |
301 |
tatggggcaaaaatgatgatgatg |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
13982661 |
tatggggcaaaaatgatgatgatg |
13982638 |
T |
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